PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002146.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 294aa MW: 33351.9 Da PI: 6.3698 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.1 | 1.4e-52 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGfrFhPtdeelv++yL++k+++ ++++ +i+e+d+yk++PwdLp ++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkat Itr_sc002146.1_g00002.1 7 LPPGFRFHPTDEELVMHYLCRKCASLPISV-PIIAEIDLYKFDPWDLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGRGYWKAT 91 79****************************.88***************6666689******************************* PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g dk++ + + vg+kk Lvfy+g+apkgekt+W+mheyrl Itr_sc002146.1_g00002.1 92 GADKPIGQ--PKPVGIKKALVFYSGKAPKGEKTNWIMHEYRL 131 ******98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-62 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.557 | 7 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-27 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAGGLQLPPG FRFHPTDEEL VMHYLCRKCA SLPISVPIIA EIDLYKFDPW DLPDMALYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGRGYWKA TGADKPIGQP KPVGIKKALV FYSGKAPKGE 120 KTNWIMHEYR LADVDRSARK KSNSLRLDDW VLCRIYNKKG ELEKADGSIR NMSKATASSP 180 VSEEEEKKPE MMLPPPPQPQ PPQVFSDFLY LEPSDSIPKL HTESSCSEHV LSPEFTCDRE 240 VQSEAKMSEW DKTALNFPFN YQNATADGGF LGCGDLPGSY DAWPLQDMLL YKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-80 | 5 | 164 | 13 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196804.1 | 0.0 | PREDICTED: NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-136 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A1U9Y648 | 0.0 | A0A1U9Y648_IPOPC; NAC1 | ||||
STRING | XP_009629774.1 | 1e-152 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-130 | NAC family protein |