PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002142.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 756aa    MW: 86708 Da    PI: 8.7501
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002142.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.2e-2062156290
                     FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                              fY++YA+ vGF+vr  +++k+ r+g++  + +vCs+eg++  +k k       t++++r+r+++r+gCka++++++  +g ++++ 
  Itr_sc002142.1_g00011.1  62 FYQAYARAVGFDVRHGTMRKT-REGKVAIKYMVCSREGFKPVNKPKnnakgvcTKQKKRRRVSKRVGCKARIVITRYPQGGYKLHG 146
                              9******************99.666699999********9887777789************************************* PP

                     FAR1  81 leleHnHela 90 
                              +el H+H l+
  Itr_sc002142.1_g00011.1 147 VELRHTHCLC 156
                              *******998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1762156IPR004330FAR1 DNA binding domain
PfamPF105517.2E-24277376IPR018289MULE transposase domain
PROSITE profilePS5096610.633556592IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-6563588IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-6567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MDANAERREG DDTGGEENDQ GAIECEMEIS PNGTKQWLPT ANPEETPYVG QQFKTVEEAI  60
LFYQAYARAV GFDVRHGTMR KTREGKVAIK YMVCSREGFK PVNKPKNNAK GVCTKQKKRR  120
RVSKRVGCKA RIVITRYPQG GYKLHGVELR HTHCLCSYIR RQFLKVNRKL DSAHKTFLAN  180
CAKANIGPSK GFRLYKEMVG SFSAIGATCI DFRNFRRDML AYISGADAQM LVEDMFKKKE  240
ISPDFYFDFD LDDSGQLCRL FWADGVLRKN FACFGDVMSF DATYRTNRIP VSVFKICVVF  300
VPFTGVDNHK RCITFGAGLL GKENSDSYEW LLKSFKTAMG ATPRCAITDQ DPALKVAVPK  360
IMPTTRHMFC MWHIMTKMGN KVEKELAKNK EFRKALNNTV WDETLSIEEF ERKWQMVSWF  420
AQLYEERASW IPAYFHDIFM GGLLKTTSRS ESENCYYGNF TNHHCTLVEF YMQFNSAIEE  480
QRYKQSKLNA ECEGSFPEIK TPLGIERQAA ASYTTTMFYE FQKEVWESSF TCHITGKCIA  540
DDECTYRVKE NGGGEFEVTT QANVEQARCT CKKFNRMGIL CRHVLSVLRN EGVDEIPGEY  600
IVTRWTRNAC TRPMHDIWWA TTNNSQAQNE ARSVANQLWN EFYNCMGLVN GWQEKMEEML  660
TTLQQLKKEF SKAKQPSNQP NIPDNTIESI LGSKPTGDIQ IKPPRVAKNK GSGKRLKSTK  720
EKVIEKIKKK PRLCATCRGP GHDSRNCEEN KTDEED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KRRRV
2713730KRLKSTKEKVIEKIKKKP
3725731KIKKKPR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178259.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-86FAR1-related sequence 5