PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc002135.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

NAC

Protein Properties

Length: 526aa MW: 60658.1 Da PI: 6.2016

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc002135.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.2	3.4e-15	51	98	2	50
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 ppG+rFhP+d+el+v+yL +kv++++l++ +i++v+ y+++PwdLp++ Itr_sc002135.1_g00003.1 51 PPGVRFHPSDQELIVYYLFNKVNSHPLPA-CIITDVEFYNYNPWDLPSN 98 9************************99.78************953 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-16	43	99	IPR003441	NAC domain
PROSITE profile	PS51005	11.71	50	261	IPR003441	NAC domain
Pfam	PF02365	5.0E-6	51	92	IPR003441	NAC domain
Gene3D	G3DSA:3.80.10.10	7.2E-22	109	402	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF81383	2.75E-10	110	166	IPR001810	F-box domain
Pfam	PF00646	1.0E-4	113	150	IPR001810	F-box domain
SuperFamily	SSF52047	1.26E-16	195	405	No hit	No description
SMART	SM00579	1.0E-4	451	521	IPR006566	FBD domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MPSLGMVTGW SPSPSLPEMA TNWSPSPAVN WRRRPVGRHP HRAAISSFHF PPGVRFHPSD 60 QELIVYYLFN KVNSHPLPAC IITDVEFYNY NPWDLPSNLM AQPQIVADAS RDLISHLPAE 120 IKDRILECLP TLDAARTALL STHWNDAWLR HGRLAFDFNF FWHFRESKGY TLLPFVQIIT 180 RILLQRVQPV KKFSLVIPSL ESLDPKLEQS DLDQWFDFLS RNGVEELRIS NGGNVTPYKL 240 PFCIVSCPTI KQLRLCKVYF DFPPNAPCIF PCVTSLEFLD VSFAHNVNGI VYSIPNLEKL 300 DLSNCRWISN FKISAPKLES LSITGCRYEF GFICKFESSW FALHLRAIKN WRDAVVASFP 360 TAINLQVLKL HSFEFAREKH LKGVLQLLQK SPNLCELEIT GYDEIEEDDD MEDDDDMEDD 420 DMEDDFMEDY DIEAASRLLK DPESCIINQD LKVLKTIKIK LFCRSPVEMM FMKMLLSKSP 480 ILERVVITEY RYIKDGCTVI KFLRELRCFP RASPKAQIVV KGKDYA

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MPSLGMVTGW SPSPSLPEMA TNWSPSPAVN WRRRPVGRHP HRAAISSFHF PPGVRFHPSD  60
QELIVYYLFN KVNSHPLPAC IITDVEFYNY NPWDLPSNLM AQPQIVADAS RDLISHLPAE  120
IKDRILECLP TLDAARTALL STHWNDAWLR HGRLAFDFNF FWHFRESKGY TLLPFVQIIT  180
RILLQRVQPV KKFSLVIPSL ESLDPKLEQS DLDQWFDFLS RNGVEELRIS NGGNVTPYKL  240
PFCIVSCPTI KQLRLCKVYF DFPPNAPCIF PCVTSLEFLD VSFAHNVNGI VYSIPNLEKL  300
DLSNCRWISN FKISAPKLES LSITGCRYEF GFICKFESSW FALHLRAIKN WRDAVVASFP  360
TAINLQVLKL HSFEFAREKH LKGVLQLLQK SPNLCELEIT GYDEIEEDDD MEDDDDMEDD  420
DMEDDFMEDY DIEAASRLLK DPESCIINQD LKVLKTIKIK LFCRSPVEMM FMKMLLSKSP  480
ILERVVITEY RYIKDGCTVI KFLRELRCFP RASPKAQIVV KGKDYA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019176009.1	0.0	PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like
Refseq	XP_019176016.1	0.0	PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like
Refseq	XP_019176023.1	0.0	PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like
Refseq	XP_019176032.1	0.0	PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	8e-15	NAC domain containing protein 32