PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002135.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 37998.8 Da PI: 9.0348 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.5 | 4.8e-48 | 13 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 ppG+rFhP+d+el+v+yL +kv++++l++ +i++v+ y+++PwdLpk + +e+ew+fFs+rd+ky++g r+nr+t+sgyWkatg Itr_sc002135.1_g00002.1 13 PPGVRFHPSDQELIVYYLFNKVNSHPLPA-CIITDVKFYNYNPWDLPKLAIFGEDEWFFFSPRDRKYPNGVRPNRTTASGYWKATG 97 9**************************99.78***************75556899******************************* PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +d+++ls +g+++g+kk Lvfy g+ap+g ktdW m eyrl Itr_sc002135.1_g00002.1 98 SDRPILSPDGSKIGVKKALVFYIGKAPSGLKTDWNMMEYRL 138 ***************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-59 | 6 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.066 | 12 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-24 | 13 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MASRPAISSF HFPPGVRFHP SDQELIVYYL FNKVNSHPLP ACIITDVKFY NYNPWDLPKL 60 AIFGEDEWFF FSPRDRKYPN GVRPNRTTAS GYWKATGSDR PILSPDGSKI GVKKALVFYI 120 GKAPSGLKTD WNMMEYRLPD TSIKPSRPKG SSMRLDDWVL CRVRQKGNMS KNAWEAQPSP 180 QELLSYLPNN EKLPSVNDDP LRDINTNYLL TKDNSLIYSM FLQGLIPLEN ILRAASQFSS 240 DGKYYTGYEH ESGKVNTQVT NSSFQSFFGS SKRKHDDGTK YQNPHDLIKT ISDGNKSEDF 300 LLSNMLDTNH RNFYNENQPP VDTFSGIQYQ MP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-63 | 3 | 175 | 6 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019166497.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
TrEMBL | A0A068UFT8 | 1e-107 | A0A068UFT8_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0004g03080.t01 | 3e-99 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13390 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 4e-69 | NAC domain containing protein 25 |