PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002092.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 124aa    MW: 13703.6 Da    PI: 7.8142
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002092.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS70.33.7e-22511936149
                     GRAS  36 dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavege....ervHiiDf 117
                              ++++Rlaa+ ++AL + l + +s+ +    +++ ++++s     +l +f+ + P++++ +  aN+ Il+a+ ++    +++Hi D+
  Itr_sc002092.1_g00011.1   5 KANHRLAAHDLQALTHYLGS-GSSFA---GVTTFASTTSNFFRESLMIFNGINPWFRILNSFANSSILQALVEQpdrpKCLHIPDI 86 
                              789***************99.44444...3334444457777778889**********************9998899999****** PP

                     GRAS 118 disqGlQWpaLlqaLasRp.egppslRiTgvgs 149
                              ++s+G+QWp+Ll++L+ Rp ++pp l + ++ +
  Itr_sc002092.1_g00011.1  87 GVSHGIQWPTLLEELTHRPgGPPPLLHLSVITP 119
                              *******************55566999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098520.7681124IPR005202Transcription factor GRAS
PfamPF035141.3E-195119IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MSKYKANHRL AAHDLQALTH YLGSGSSFAG VTTFASTTSN FFRESLMIFN GINPWFRILN  60
SFANSSILQA LVEQPDRPKC LHIPDIGVSH GIQWPTLLEE LTHRPGGPPP LLHLSVITPT  120
VDNQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196358.11e-65PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC88e-37NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A076FNG41e-45A0A076FNG4_TOBAC; GRAS16 protein
TrEMBLA0A1S3Z0D81e-45A0A1S3Z0D8_TOBAC; nodulation-signaling pathway 1 protein-like
STRINGXP_009594760.12e-46(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.12e-26GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]