PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc002046.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 278aa    MW: 30937.7 Da    PI: 7.4491
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc002046.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-1895145256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                               y+GVr+++ +g+WvAeIr p +   r r++lg++++ae Aa a+++a+ kl+ge
  Itr_sc002046.1_g00003.1  95 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDSAEAAAYAYDRAAYKLRGE 145
                              59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.42E-1794154No hitNo description
SMARTSM003806.9E-3495158IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-2295153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3095153IPR001471AP2/ERF domain
PROSITE profilePS5103223.0995152IPR001471AP2/ERF domain
PfamPF008477.1E-1396145IPR001471AP2/ERF domain
PRINTSPR003671.1E-1296107IPR001471AP2/ERF domain
PRINTSPR003671.1E-12134154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MPEIHEENNN AQIRSSLSQL ILKSGSNNTL DSIFSHCHQE SNPSPVVQPL GSSVYLRQRD  60
LLQKFCEENR TNPAGDPFKN FLYANPAGAG GKKKLYRGVR QRHWGKWVAE IRLPQNRMRV  120
WLGTYDSAEA AAYAYDRAAY KLRGEYARLN FPDLRDPARL GFGESANKLN AVKNAVDAKI  180
QAIRQKVRRE KAKTEAKKSD ESVMAVESSS CSLAGNESWS STISPSVSED GFWMSDTSPV  240
SGELAAGAVA EQTSEMEDCF LARMPSFDPE LIWEVLAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1992152263ATERF1
3gcc_A5e-1992152263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150909.11e-147PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W21e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A314UGY35e-95A0A314UGY3_PRUYE; Ethylene-responsive transcription factor ERF061
STRINGXP_009604256.14e-99(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.15e-67ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]