PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002012.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9507.46 Da PI: 6.8031 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.6 | 5.9e-08 | 15 | 54 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41 +WT+++ +++ +a +++ + +W Iar++g +++ ++k Itr_sc002012.1_g00004.1 15 SWTADLNKQFEEALARHDRDtpdRWQNIAREVG--KSPAEVK 54 7*****************99************8..8998888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.28E-10 | 14 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-5 | 15 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.49E-4 | 15 | 55 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MASDSLSSRG AGASSWTADL NKQFEEALAR HDRDTPDRWQ NIAREVGKSP AEVKQLYDIL 60 VHDLKHIESG DVPVPNYTST GTRRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-27 | 7 | 81 | 3 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021642455.1 | 9e-32 | protein RADIALIS-like 1 | ||||
Swissprot | Q58FS3 | 9e-27 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A445HKP9 | 1e-28 | A0A445HKP9_GLYSO; Protein RADIALIS-like 1 | ||||
TrEMBL | K7LSY9 | 1e-28 | K7LSY9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G04680.2 | 2e-29 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-25 | RAD-like 6 |
Publications ? help Back to Top | |||
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