PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc002000.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 167aa MW: 18680.5 Da PI: 7.055 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 168.8 | 4.3e-52 | 2 | 166 | 18 | 195 |
GRAS 18 elaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103 +la+al++++ la++++ +m+++a+yf+eAL +r++r l ps+ + + + + + f+e +P lkf+++t+ Il Itr_sc002000.1_g00008.1 2 KLAEALVKQIGFLAASQAGAMRKVATYFAEALTQRIYR--------LYPSNHN--DFAFSGLLQMHFYESCPHLKFAYFTT---IL 74 689***********************************........4444444..56667667777*************95...** PP GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 ea++++++vH iDf+++qG+QWpaLlqaLa Rp+gpp++R+Tg+++p++++++ l+e+g++La++Ae+++v+fef+ +va++l+dl Itr_sc002000.1_g00008.1 75 EAFANKNCVHAIDFSMKQGMQWPALLQALALRPGGPPNFRLTGISPPSNDNTDHLQEVGWKLAQLAETINVEFEFRGFVANSLADL 160 ************************************************************************************** PP GRAS 190 eleeLr 195 + ++++ Itr_sc002000.1_g00008.1 161 DASMFN 166 *99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 30.455 | 1 | 167 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-49 | 2 | 166 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MKLAEALVKQ IGFLAASQAG AMRKVATYFA EALTQRIYRL YPSNHNDFAF SGLLQMHFYE 60 SCPHLKFAYF TTILEAFANK NCVHAIDFSM KQGMQWPALL QALALRPGGP PNFRLTGISP 120 PSNDNTDHLQ EVGWKLAQLA ETINVEFEFR GFVANSLADL DASMFNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-21 | 1 | 167 | 34 | 208 | Protein SCARECROW |
5b3h_D | 1e-21 | 1 | 167 | 34 | 208 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019160270.1 | 1e-105 | PREDICTED: DELLA protein GAI1-like | ||||
Swissprot | Q8S4W7 | 8e-92 | GAI1_VITVI; DELLA protein GAI1 | ||||
TrEMBL | A0A068TWY6 | 2e-97 | A0A068TWY6_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A314L1W5 | 6e-96 | A0A314L1W5_NICAT; Della protein gai1 | ||||
STRING | XP_009789076.1 | 2e-96 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12864 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-83 | GRAS family protein |