PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001975.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 277aa    MW: 29393 Da    PI: 7.0469
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001975.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF596e-191759345
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             i+ ks  +vtfskRr+g++KKA+ LS+LC+a+va+i+fs+ g+
  Itr_sc001975.1_g00004.1 17 IQKKSSLEVTFSKRRTGLFKKASMLSTLCGADVAIIVFSPAGN 59
                             78899999********************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.591758IPR002100Transcription factor, MADS-box
SMARTSM004321.0E-24767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-22878IPR002100Transcription factor, MADS-box
CDDcd002651.44E-30877No hitNo description
PRINTSPR004041.3E-13929IPR002100Transcription factor, MADS-box
PfamPF003193.9E-211664IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAARTSRGRQ RIEMVKIQKK SSLEVTFSKR RTGLFKKASM LSTLCGADVA IIVFSPAGNK  60
VFSFGHPTVE AVVERFLGED NPAPVNETGG GVLATEQFIE AQRNARVQEL NMELTRLEAV  120
FEFEKKRGEV IDGFVEANRE AHGWMRSSYD DLSFEQLVTL KSGMENLMKE IQQKAHLQLM  180
AMHGNGTPFN TYAGGNMVSG DPTSEFNFGT SGGSPGTLPF TSGVPGAHPS TSGGAATATS  240
AFPGCSSMAG GNNAGSPWAA GTSSDACGNF GAGRPFF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019196307.11e-108PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-44AGAMOUS-like 62