PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001975.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 295aa MW: 30946.8 Da PI: 8.2664 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.4 | 1.9e-18 | 16 | 59 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +ie ksn +vtfskRr g++KKA+ LS+LC+a+v +i+fs+ g+ Itr_sc001975.1_g00003.1 16 KIERKSNLEVTFSKRRIGLFKKASVLSTLCGADVGIIVFSPAGN 59 5999*************************************984 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.591 | 7 | 58 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.9E-24 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-22 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.08E-31 | 8 | 77 | No hit | No description |
PRINTS | PR00404 | 1.0E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.5E-20 | 16 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-13 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAARTGRGRQ RIEMVKIERK SNLEVTFSKR RIGLFKKASV LSTLCGADVG IIVFSPAGNK 60 VFSFGHPSVE AVVERFLGED NPAPVNETGG GALATEQFVE AQRNARVQEL NMELTPLEAV 120 FEFEKKKGEA IDGFVEANRE AHGWMRGSYD DLSFQQLVTL KSGMKNLMKE IQQKAHHQLM 180 AVHGNGTPFN PYASGVFPSG NMVPGNPTFE FNFGTNGGAA GALPFTSGVP GAHPFTSGGV 240 AGALPFTSCV PGVHPSTSGS SSMAGGYTTV SPSVASTSGA SNSAGGNLGA THAFF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019196307.1 | 1e-109 | PREDICTED: agamous-like MADS-box protein AGL62 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 7e-43 | AGAMOUS-like 62 |