PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001975.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 181aa    MW: 19288.7 Da    PI: 7.6837
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001975.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.2e-191658244
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             +ie ksn +vtfskRr+g++KKA+ LS+LC a++a+i+fs+ g
  Itr_sc001975.1_g00001.1 16 KIERKSNLEVTFSKRRAGLFKKASVLSTLCSADIAIIVFSPVG 58
                             599*************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.843758IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-23767IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-22878IPR002100Transcription factor, MADS-box
CDDcd002652.10E-31877No hitNo description
PRINTSPR004041.4E-14929IPR002100Transcription factor, MADS-box
PfamPF003191.8E-201664IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-142944IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-144465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAARTGRGRQ RIEMVKIERK SNLEVTFSKR RAGLFKKASV LSTLCSADIA IIVFSPVGNK  60
VFSFGHPTVE AVVERFLGED NPAPVNETGG GALATEQFIE AQQNARVQEL NVELTRLEAV  120
FEFEKKRGEA IDGFVEANPH PSTSGSSSMA GGYNTVSPWV ASTSGASNSA GGHLGASHAF  180
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176892.11e-68PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1R3IGJ35e-42A0A1R3IGJ3_COCAP; Transcription factor, MADS-box
STRINGevm.model.supercontig_106.184e-43(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-38AGAMOUS-like 62