PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001952.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 199aa MW: 21610.5 Da PI: 4.6076 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 134.4 | 4.5e-42 | 32 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe +r da+sslvyeA+ar+rdPvyG++g i +lq+q Itr_sc001952.1_g00002.1 32 PCAACKILRRRCAEKCVLAPYFPPNDPLKFTTAHRVFGASNIIKILQDLPEAQRADAVSSLVYEANARLRDPVYGSAGAICHLQKQ 117 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +++l+a+la++++e Itr_sc001952.1_g00002.1 118 VNELQAQLAVAQAE 131 **********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.162 | 31 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-42 | 32 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MESSSETTTN SSRSSSSPPP PATPPPVPVV SPCAACKILR RRCAEKCVLA PYFPPNDPLK 60 FTTAHRVFGA SNIIKILQDL PEAQRADAVS SLVYEANARL RDPVYGSAGA ICHLQKQVNE 120 LQAQLAVAQA ELVNIQMQCQ QANLMALIYM ENTAAAKSAP LQQSSFDDDA DLAFLDENNF 180 LGSYFWDQSL SSLDMMSVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 31 | 134 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 31 | 134 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610820.1 | 1e-80 | PREDICTED: LOB domain-containing protein 1-like | ||||
Refseq | XP_016509518.1 | 1e-80 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-66 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A1S4D850 | 2e-79 | A0A1S4D850_TOBAC; LOB domain-containing protein 1-like | ||||
STRING | XP_009610820.1 | 4e-80 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 6e-52 | LOB domain-containing protein 1 |