PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001947.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 233aa    MW: 25221 Da    PI: 6.637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001947.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000356486123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y+C+ C++sF++   L  H  +H
  Itr_sc001947.1_g00002.1 64 YECKTCNRSFPSFQALGGHRASH 86
                             99**********99999998887 PP
2zf-C2H211.60.00084131153123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C   Fs+   L  H+r+H
  Itr_sc001947.1_g00002.1 131 HECSICRAEFSSGQALGGHMRRH 153
                              78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.5E-136388IPR007087Zinc finger, C2H2
SMARTSM003550.066486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3886491IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SuperFamilySSF576671.72E-5129158No hitNo description
PROSITE profilePS5015710.014131158IPR007087Zinc finger, C2H2
SMARTSM003550.05131153IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-12131155IPR007087Zinc finger, C2H2
PROSITE patternPS000280133153IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEFSQEISYV QSPTCSAEED EDMAANCLIL LAQGGCRVKQ VAAAAAGKIS SRKFSEMAGG  60
AGVYECKTCN RSFPSFQALG GHRASHKKPK LMDHHEQHHY DHYHYELKKQ SPPPPSAAQS  120
SGGSSKLAKI HECSICRAEF SSGQALGGHM RRHRPPAPIN TAAAKASVSN SNEEEATESS  180
YGEGENTKGA LYSLDLNLPA PQEEEEGCNK FEFSGKQQQS LVFSVPALVD CHY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2637480.0AB263748.2 Ipomoea trifida DNA, self-incompatibility (S-) locus region, haplotype:S1.
GenBankAH0137500.0AH013750.2 Ipomoea trifida haplotype S1 putative disease resistance protein gene, partial cds; hypothetical protein, putative zinc finger protein, putative tnp2 transposase, putative transposase En/Spm, putative 50S ribosomal protein L9, hypothetical protein, putative CDK regulatory subunit, putative copia-like polyprotein, putative PHD zinc finger protein, putative glycosyltransferase, hypothetical protein, putative RelA/SpoT protein, hypothetical protein, putative defensin protein, hypothetical protein, putative phosphatidylcholine-sterol acyltransferase, putative dihydroflavonol reductase, putative non-phototropic hypocotyl 3-like protein, putative adapitin protein, putative DNA repair protein, putative serine/arginine (SR) protein kinase protein, putative vacuolar assembling protein, hypothetical protein, putative serine carboxipeptidase, hypothetical protein, putative endonuclease III protein, hypothetical protein, prephenate dehydratase, putative pentatricopeptide repeat-containing protein, putative tRNA isopentenylpyrophosphatase, hypothetical protein, putative histone deacetylase, and putative neutral invertase genes, complete cds; and putative protein kinase gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199478.11e-105PREDICTED: zinc finger protein ZAT5
TrEMBLQ6JJ641e-156Q6JJ64_IPOTF; Putative zinc finger protein
STRINGXP_009776555.11e-61(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-40C2H2 family protein