PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001914.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 355aa    MW: 38854.6 Da    PI: 7.5291
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001914.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-171461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Itr_sc001914.1_g00003.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61
                             79******************************99************97 PP
2Myb_DNA-binding45.81.4e-1467137148
                              TSSS-HHHHHHHHHHHHHTTTT........................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................tWktIartmgkgRtlkqcksrwqkyl 48 
                              rg++T++E++ ++++ ++lG++                        +W++Ia++++  Rt++++k++w+++l
  Itr_sc001914.1_g00003.1  67 RGNFTEQEEKMIIHLQALLGNRwevmssslsggdleidslcfnrlrNWAAIASYLP-QRTDNDIKNYWNTHL 137
                              89******************************************************.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.33965IPR017930Myb domain
SMARTSM007172.0E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
SuperFamilySSF466892.09E-231590IPR009057Homeodomain-like
CDDcd001678.75E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.3E-106598IPR009057Homeodomain-like
PROSITE profilePS5129410.46166141IPR017930Myb domain
SMARTSM007178.7E-1366139IPR001005SANT/Myb domain
PfamPF002491.1E-1267137IPR001005SANT/Myb domain
SuperFamilySSF466893.94E-967138IPR009057Homeodomain-like
CDDcd001671.94E-869137No hitNo description
Gene3DG3DSA:1.10.10.603.1E-13112145IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGRPPCCDKV GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEQEEKMIIH LQALLGNRWE VMSSSLSGGD LEIDSLCFNR LRNWAAIASY  120
LPQRTDNDIK NYWNTHLKKK LKKMQGEDGA ESSGGQDGNS SSSSHHSISK GQWERRLQTD  180
IHLAKQALCE ALSMDKSKPV LSAGGSSNPA PVPVQTGPYA SSAENIARLL ESWVKNHGPT  240
RSNSETTVTQ TGFAGSTSSP SEATFDHSLF SFNSTCNNSE ALSAVESKPV FARAAVAPPT  300
FLTQAKPNNY NNAPPETQMP LTLLENWLFD DAANVHPQEG IMGMPVPLAG TAELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-20141414105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-201414127128MYB TRANSFORMING PROTEIN
1mse_C9e-21141414105C-Myb DNA-Binding Domain
1msf_C9e-21141414105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198062.10.0PREDICTED: myb-related protein 306
SwissprotP813921e-119MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A328D3X81e-130A0A328D3X8_9ASTE; Uncharacterized protein
STRINGXP_008239949.11e-129(Prunus mume)
STRINGXP_009594207.11e-129(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-105myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]