PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001890.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | NAC | ||||||||
Protein Properties | Length: 426aa MW: 48947.5 Da PI: 5.257 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.2 | 3.4e-32 | 14 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 lp+G++F+P+d+e+v +L +k+ +++ ++++ ++e +i++++P++Lp +k + + +fF+++ k+y+tg+rk+r++ Itr_sc001890.1_g00004.1 14 LPRGVKFDPSDQEIV-WHLIAKIGAEDlqphpfIDEFIPtVEEDdGICYTHPQNLP-GIKMDGSCSHFFHRAIKAYNTGTRKRRKI 97 799************.778999988886665443332222444435**********.666677888******************86 PP NAM 79 k.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + + +W++tg++k+vl +g ++g+kk++v+y ++ k+ekt+Wvmh+y+l Itr_sc001890.1_g00004.1 98 HgdnfgDVRWHKTGRTKPVLL-DGVQKGCKKIMVLYvsPAKGGKPEKTNWVMHQYHL 153 555555888************.99************6533555666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-37 | 5 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.237 | 14 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-13 | 15 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MKQLYTVTHE WPGLPRGVKF DPSDQEIVWH LIAKIGAEDL QPHPFIDEFI PTVEEDDGIC 60 YTHPQNLPGI KMDGSCSHFF HRAIKAYNTG TRKRRKIHGD NFGDVRWHKT GRTKPVLLDG 120 VQKGCKKIMV LYVSPAKGGK PEKTNWVMHQ YHLGTSEDER EGEYVISKVY YQQQQVKHNK 180 KSECQSPNGH EYLTVKVDPV TPKSVTPEPP FTERRFSSSD AVSLTPAAYC SSNIQEVNYI 240 EDHMETPFQK PGNHDLITEN QIDEMEAKNE NEAGDDPKWY DLEAQNIMDS QQLAEYISLC 300 DEFIISQSPS REDQQNHKEK KRKTRLSDHY ACLGAEDLKK DLEECQDYEQ QNHKEKKCKT 360 RLSDHYACLG AEDLKKDSEC QDYELDPANI ILDTPPDFRL SQLEFPSQDS FIAWGGHKIG 420 SEEQGD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019168424.1 | 0.0 | PREDICTED: NAC domain-containing protein 8-like isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-137 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A2Z5HVN1 | 0.0 | A0A2Z5HVN1_IPOBA; NAC11 protein | ||||
STRING | PGSC0003DMT400002122 | 1e-179 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8162 | 24 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-139 | NAC family protein |