PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001879.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

GRAS

Protein Properties

Length: 519aa MW: 58756.5 Da PI: 5.1238

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001879.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	270.8	4.5e-83	144	517	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 Ll++Ae v ++d a+ lL+r el+s +g++++Rl++yf + L a+++ + + ++ +++ ++ +l ++++ Itr_sc001879.1_g00006.1 144 GYLLSAAEKVGQSDYDSAEILLTRCDELSSHQGNSVERLVHYFSQSLWAKIFTQ---TDSSALFFQEDLEQALMSLRPCIAYHQKV 226 679***********************************************93...333333344432334444444455* PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv 174 Pi ++ ++t q++ e ve +++vHiiD++i G+QW L+q++a+ p+ p l+iT++++ ++++++ eetg rL++fA++l++ Itr_sc001879.1_g00006.1 227 PITQVFQFTSIQTVIEHVEDARKVHIIDLEIRSGVQWTILMQSFAESPR-PELLKITALQA-NKHQSKIEEETGMRLRSFAQSLNL 310 ******************************************665.479****.667788889*********** PP GRAS 175 pfefnvlvak.rledleleeL...rvkp........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 f++n+++ + l+d + ++L + p +E+++V + l ++ +++ ++es +++++ks++P+v+ ++e ea++ Itr_sc001879.1_g00006.1 311 CFSYNLVALDdLLNDNKENSLsgfQ--PdgeeeeeeEEVVVVYASCFLTTMISKQEKMES----LMRVIKSVNPRVMFLTEVEANM 390 **9666345666677785440..2444455669999********88888888....****************** PP GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 ns F++rf+eal yy a fd+le + +++ +r+++E++ +g+ i+nvva eg++r+ rh + + Wre + ++G+++++ls+ + Itr_sc001879.1_g00006.1 391 NSVGFVNRFTEALFYYGAYFDALEDCMKSDEANRTTMEAKHFGQGIRNVVASEGESRVIRHVSIKVWREFFVRFGMEEMELSTPSV 476 ********************************************************************************** PP GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 qa l+l++++ ++ +++ + ++l+ gWk+ pL+s+SaW+ Itr_sc001879.1_g00006.1 477 YQATLVLKRFGcGKSCTLDMDGKALTVGWKGTPLLSLSAWK 517 *******9999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.221	116	496	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-80	144	517	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MGNSGFNPLS PQNSALNEAN GEEEDDHQIL VLVNSPTLQD LYLDAAVQPP FDESSNKETH 60 PAILPSSLAL LKRFGRRFSK LKGQKKTNPR RKRAEESDNP SKKLSTDAIL RLAGHNFIQS 120 FSHHDSTFFL GLSDQDRKDV ELVGYLLSAA EKVGQSDYDS AEILLTRCDE LSSHQGNSVE 180 RLVHYFSQSL WAKIFTQTDS SALFFQEDLE QALMSLRPCI AYHQKVPITQ VFQFTSIQTV 240 IEHVEDARKV HIIDLEIRSG VQWTILMQSF AESPRPELLK ITALQANKHQ SKIEEETGMR 300 LRSFAQSLNL CFSYNLVALD DLLNDNKENS LSGFQPDGEE EEEEEEVVVV YASCFLTTMI 360 SKQEKMESLM RVIKSVNPRV MFLTEVEANM NSVGFVNRFT EALFYYGAYF DALEDCMKSD 420 EANRTTMEAK HFGQGIRNVV ASEGESRVIR HVSIKVWREF FVRFGMEEME LSTPSVYQAT 480 LVLKRFGCGK SCTLDMDGKA LTVGWKGTPL LSLSAWKFL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MGNSGFNPLS PQNSALNEAN GEEEDDHQIL VLVNSPTLQD LYLDAAVQPP FDESSNKETH  60
PAILPSSLAL LKRFGRRFSK LKGQKKTNPR RKRAEESDNP SKKLSTDAIL RLAGHNFIQS  120
FSHHDSTFFL GLSDQDRKDV ELVGYLLSAA EKVGQSDYDS AEILLTRCDE LSSHQGNSVE  180
RLVHYFSQSL WAKIFTQTDS SALFFQEDLE QALMSLRPCI AYHQKVPITQ VFQFTSIQTV  240
IEHVEDARKV HIIDLEIRSG VQWTILMQSF AESPRPELLK ITALQANKHQ SKIEEETGMR  300
LRSFAQSLNL CFSYNLVALD DLLNDNKENS LSGFQPDGEE EEEEEEVVVV YASCFLTTMI  360
SKQEKMESLM RVIKSVNPRV MFLTEVEANM NSVGFVNRFT EALFYYGAYF DALEDCMKSD  420
EANRTTMEAK HFGQGIRNVV ASEGESRVIR HVSIKVWREF FVRFGMEEME LSTPSVYQAT  480
LVLKRFGCGK SCTLDMDGKA LTVGWKGTPL LSLSAWKFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	8e-34	147	517	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019160507.1	0.0	PREDICTED: DELLA protein RGL2-like
TrEMBL	A0A1S4BHG3	1e-152	A0A1S4BHG3_TOBAC; DELLA protein RGL1-like
STRING	XP_009602534.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3427	21	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	1e-52	RGA-like 2