PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001868.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 286aa    MW: 31640.4 Da    PI: 7.8197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001868.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.6e-191461148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+WT+eEd  lv +v+q+G+ +W+t++++ g++R+ k+c++rw +yl
  Itr_sc001868.1_g00001.1 14 KGPWTPEEDIMLVSYVQQHGPANWRTVPAHTGLRRCSKSCRLRWTNYL 61
                             79********************************************97 PP
2Myb_DNA-binding48.22.4e-1567112148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              rg +T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Itr_sc001868.1_g00001.1  67 RGCFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                              899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129425.864965IPR017930Myb domain
SuperFamilySSF466892.62E-3011108IPR009057Homeodomain-like
SMARTSM007171.9E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001675.28E-111661No hitNo description
Gene3DG3DSA:1.10.10.601.8E-2465117IPR009057Homeodomain-like
PROSITE profilePS5129420.14666116IPR017930Myb domain
SMARTSM007173.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.8E-1467112IPR001005SANT/Myb domain
CDDcd001674.05E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRPPCCDKQ GVKKGPWTPE EDIMLVSYVQ QHGPANWRTV PAHTGLRRCS KSCRLRWTNY  60
LRPGIKRGCF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKLVE  120
SGGLMIESSS RFSSSSSSSH SSSSRGQWER TLQADINTAK QALNDALSLE KPTRHRPLDF  180
IPQPPAPVQY ASSADNIARL LKGWMESPAK SYSTPSTSNS NGGAATTTVT DTSSSSSDDA  240
PGGICLSEAF ESLFGFDSDQ FSQSYESKPQ VPLSVMLESW LLDDDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-28141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-281211625128MYB TRANSFORMING PROTEIN
1mse_C6e-28141164105C-Myb DNA-Binding Domain
1msf_C6e-28141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157014.11e-143PREDICTED: myb-related protein 306-like
SwissprotQ9SN783e-99MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A1S3WY161e-120A0A1S3WY16_TOBAC; myb-related protein 306-like
STRINGXP_009629125.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.13e-94myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]