PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001846.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 392aa    MW: 43493.3 Da    PI: 5.0429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001846.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.62.3e-07148201457
                     GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsv 57 
                              l+l++ e vs++++ +  +l+++ +++as + +p+qR+a yf+ AL+ar+ r++
  Itr_sc001846.1_g00005.1 148 LILAATEKVSDQQFDKPIRLVSQCQNNASCTSSPVQRAALYFADALQARIERQT 201
                              57788899******************************************9954 PP
2GRAS55.98.8e-18223308117201
                     GRAS 117 fdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                              f++  G+QW +L+qaL++R+     g++ +R T+++    ++ke++eet++rL++fA+++++p++fnvl+  +l+ l+ e+ +++ 
  Itr_sc001846.1_g00005.1 223 FNMATGVQWSTLMQALSERTavedCGQHYFRFTAIET---TEKEMVEETRKRLQSFAAQFNLPLSFNVLYIPDLKHLKAEQVEINA 305
                              77899***************88777899*********...58******************************************99 PP

                     GRAS 199 gEa 201
                              +E+
  Itr_sc001846.1_g00005.1 306 DEV 308
                              996 PP
3GRAS61.41.9e-19307389243325
                     GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                              e ea+++s+sF++rf++al yysa fd+le ++ r+++ r+++E+  +   i+n+va eg+er+ r  +l+ Wr+ ++++G++
  Itr_sc001846.1_g00005.1 307 EVEANLTSPSFVHRFINALFYYSAYFDALEDTVRRDDQYRASIEAGSILDGIRNIVAGEGRERVTRSVSLQVWRDFFGRFGLE 389
                              6799*****************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.2351392IPR005202Transcription factor GRAS
PfamPF035148.0E-5148201IPR005202Transcription factor GRAS
PfamPF035146.5E-17307389IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MVAFSTREGD LVVPSSTFTF SHIPISSNSS ANAYDQGKAS SSGKIIDDNK QLATGFQGYG  60
DDVDLFCAKY GFYQENDQSL GVERQFITSN SSNNIQESTK LHAEKAWPSL SPAILRILGN  120
RLNPFAANTS SSGGGRDHHQ KLSAMQILIL AATEKVSDQQ FDKPIRLVSQ CQNNASCTSS  180
PVQRAALYFA DALQARIERQ TGSFGHEDDG NGVKDGECLA SRFNMATGVQ WSTLMQALSE  240
RTAVEDCGQH YFRFTAIETT EKEMVEETRK RLQSFAAQFN LPLSFNVLYI PDLKHLKAEQ  300
VEINADEVEA NLTSPSFVHR FINALFYYSA YFDALEDTVR RDDQYRASIE AGSILDGIRN  360
IVAGEGRERV TRSVSLQVWR DFFGRFGLEG GD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019162025.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1J6JB262e-64A0A1J6JB26_NICAT; Della protein rgl2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139101114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.12e-17GRAS family protein