PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001794.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 405aa MW: 43662.5 Da PI: 5.2449 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 35 | 86 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 +++ GVr+++ +grWvAeI+d ++ r +lg+f+taeeAa+a+++a++ l+g+ Itr_sc001794.1_g00009.1 35 PRFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEEAARAYDQAARTLRGA 86 6799******.7*********....4456*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.49E-31 | 35 | 93 | No hit | No description |
Pfam | PF00847 | 5.1E-14 | 35 | 85 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.508 | 36 | 93 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-36 | 36 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-20 | 36 | 93 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.0E-29 | 36 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-8 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-8 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MKQTLPPPPQ SQEQLPPLPS DVIRTRRKPS SRGHPRFVGV RQRPSGRWVA EIKDSLQKVR 60 LWLGTFDTAE EAARAYDQAA RTLRGANART NFDLPESDSG EGGCSLLPGN LEPFSFEDAC 120 RSEEPDGGLV GALKAKLFSS ESSRLFIQSN ASNATPSTIA KPQDENINNN LKNNDGGDKI 180 SSMAAAAAQF SSTNGLIDAT STSYLPNVVR AEKPKFNLDH YTPQTEQNTN IHHNYNIDHI 240 SLLTPSDHPM NTPTWLNPSH TIAATSNMMT QWPNDQTVGW IDTLQTGRGG HEMEPCSWLP 300 ISGLSSSYPE NSLDILNTPP MIMSQIGGGG ALPAETQIVQ CENEYWNSSS AAAAAAAVAG 360 ASGGAWDPFM LSSVLGVATG EYVGVGGPRW PREGKKWGFG MGEDK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-15 | 34 | 92 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019189702.1 | 0.0 | PREDICTED: uncharacterized protein LOC109184111 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11869 | 18 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-18 | related to AP2 11 |