PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001778.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 239aa    MW: 25455.3 Da    PI: 4.8099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001778.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1880129155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              ++y+GVr  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++ a+++l+ 
  Itr_sc001778.1_g00003.1  80 PKYRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDVAALALRS 129
                              79****6..668*********843...5***********************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.71E-1980138No hitNo description
PfamPF008473.3E-1180128IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-1881138IPR016177DNA-binding domain
SMARTSM003809.0E-2781143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-2781138IPR001471AP2/ERF domain
PROSITE profilePS5103220.48181137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MADPNSKTPE IIISQTPSYP NRQLQVIAAT ATTVTAAAVV EDKVTETTTL DTPNLVSPRL  60
AEQGQAAAAS SPTGGRGKHP KYRGVRSRSG KWVSEIREPR KTTRIWLGTY PTPEMAAAAY  120
DVAALALRSA EAVLNFPAYA ARYPVPVSSD AADIRRAAAS AAAMMKPESS GGDGGGGRQE  180
RNDDPSVNTE YIDEEELFNM NNLLVDMAGG MMVSPPRMNS SHPADDSPGN SDAETLWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1574137472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194728.11e-118PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A328DET41e-70A0A328DET4_9ASTE; Uncharacterized protein
STRINGPOPTR_0003s12120.14e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.15e-41ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]