PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Itr_sc001769.1_g00025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27908 Da PI: 5.7886 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l+ av+ lG ++W++ a+ ++Rt+k+c++rw +yl Itr_sc001769.1_g00025.1 8 KGPWLEEEDEKLAAAVASLGERRWDALAKASELRRTGKSCRLRWMNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 r r TteE++l++++ +++G++ W++Ia+ ++ gRt++++k++w+++l Itr_sc001769.1_g00025.1 61 RSRITTEEELLIIELQRKWGNK-WAKIAKQLP-GRTDNDIKNYWRSHL 106 6799******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.481 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-27 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.71E-8 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 27.179 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-15 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-15 | 62 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-23 | 63 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.99E-10 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MEEETLRKGP WLEEEDEKLA AAVASLGERR WDALAKASEL RRTGKSCRLR WMNYLRPNIK 60 RSRITTEEEL LIIELQRKWG NKWAKIAKQL PGRTDNDIKN YWRSHLRKKI LREQEYTFTP 120 SSTECFKNTS NKAQQMNTSW RSCTTADRAS LKDGSLGSSA DSSEVVELPD YTLVSSPYEE 180 RLWDWMSSWS HEDSEMEHHG DGENCSRNQW CCQPQWTSDY SCIGTIWDYA SSSIWDSTS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-27 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 2e-27 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167946.1 | 1e-158 | PREDICTED: transcription factor MYB57-like | ||||
TrEMBL | A0A1S3XXP8 | 5e-70 | A0A1S3XXP8_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009625011.1 | 8e-72 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53200.1 | 6e-49 | myb domain protein 27 |