PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001769.1_g00025.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 239aa    MW: 27908 Da    PI: 5.7886
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001769.1_g00025.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.7e-16855148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W +eEde+l+ av+ lG ++W++ a+   ++Rt+k+c++rw +yl
  Itr_sc001769.1_g00025.1  8 KGPWLEEEDEKLAAAVASLGERRWDALAKASELRRTGKSCRLRWMNYL 55
                             79********************************************97 PP

2Myb_DNA-binding54.33e-1761106148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                              r r TteE++l++++ +++G++ W++Ia+ ++ gRt++++k++w+++l
  Itr_sc001769.1_g00025.1  61 RSRITTEEELLIIELQRKWGNK-WAKIAKQLP-GRTDNDIKNYWRSHL 106
                              6799******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.481355IPR017930Myb domain
SuperFamilySSF466894.03E-276102IPR009057Homeodomain-like
SMARTSM007171.3E-13757IPR001005SANT/Myb domain
PfamPF002491.7E-14855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-21962IPR009057Homeodomain-like
CDDcd001671.71E-81055No hitNo description
PROSITE profilePS5129427.17956110IPR017930Myb domain
SMARTSM007171.7E-1560108IPR001005SANT/Myb domain
PfamPF002492.5E-1562106IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2363110IPR009057Homeodomain-like
CDDcd001672.99E-1065106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MEEETLRKGP WLEEEDEKLA AAVASLGERR WDALAKASEL RRTGKSCRLR WMNYLRPNIK  60
RSRITTEEEL LIIELQRKWG NKWAKIAKQL PGRTDNDIKN YWRSHLRKKI LREQEYTFTP  120
SSTECFKNTS NKAQQMNTSW RSCTTADRAS LKDGSLGSSA DSSEVVELPD YTLVSSPYEE  180
RLWDWMSSWS HEDSEMEHHG DGENCSRNQW CCQPQWTSDY SCIGTIWDYA SSSIWDSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2761102105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-27611025128MYB TRANSFORMING PROTEIN
1mse_C2e-2761102105C-Myb DNA-Binding Domain
1msf_C2e-2761102105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167946.11e-158PREDICTED: transcription factor MYB57-like
TrEMBLA0A1S3XXP85e-70A0A1S3XXP8_TOBAC; transcription factor MYB48-like
STRINGXP_009625011.18e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.16e-49myb domain protein 27