PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001769.1_g00010.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 300aa    MW: 33524.2 Da    PI: 8.3454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001769.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.4e-171462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             rg+W++eEde+l++++++ G+g +W + +++ g++R++k+c++rw++yl
  Itr_sc001769.1_g00010.1 14 RGPWSPEEDEKLKEYIEKNGPGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                             89******************99*************************97 PP
2Myb_DNA-binding36.79.9e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Itr_sc001769.1_g00010.1  69 GDFSDQEDRIICSLYATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.096966IPR017930Myb domain
SuperFamilySSF466897.35E-2712109IPR009057Homeodomain-like
SMARTSM007172.7E-121364IPR001005SANT/Myb domain
PfamPF002497.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-241569IPR009057Homeodomain-like
CDDcd001675.42E-91662No hitNo description
SMARTSM007172.1E-1167115IPR001005SANT/Myb domain
PROSITE profilePS5129416.74967117IPR017930Myb domain
PfamPF002491.2E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-2370117IPR009057Homeodomain-like
CDDcd001671.90E-771113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGRAPCCDKE KVKRGPWSPE EDEKLKEYIE KNGPGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDQEDRIIC SLYATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI  120
MLSSSSSSSS SPHHKTRPNN PLPPSSSSPF NYNNYPITDP TNFPPQYAAA TTFLMNNPSS  180
SSSAASNPVG PTIQTHHLLV KGDHHHHQGS CSSSDGSWSN NNHQISQDKE YGYGESLGLQ  240
SFGYNGVGEN QQAVINGGNP LDYSSLEEIK QLISTNNNVS QQNSFFVEEN KYEEKVMMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24141177108B-MYB
1h8a_C2e-241411727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in the regulation of meristematic competence, such as CUC2. Positively regulates axillary meristems (AMs) formation and development, especially at early phases of vegetative growth, probably by specifying a stem cell niche for AM formation. Modulates the negative regulation mediated by gibberellic acid on the timing of developmental phase transitions. {ECO:0000269|PubMed:16461581, ECO:0000269|PubMed:16473968}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By a shift from short days to long days, in the axils of primordia on the elongating stem. {ECO:0000269|PubMed:16461581}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167779.11e-159PREDICTED: transcription factor RAX2-like
SwissprotQ9FG683e-73RAX1_ARATH; Transcription factor RAX1
TrEMBLA0A1S4BYE91e-102A0A1S4BYE9_TOBAC; transcription factor RAX2-like
STRINGXP_009612981.11e-102(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-74myb domain protein 36
Publications ? help Back to Top
  1. Schnaubelt D,Schulz P,Hannah MA,Yocgo RE,Foyer CH
    A phenomics approach to the analysis of the influence of glutathione on leaf area and abiotic stress tolerance in Arabidopsis thaliana.
    Front Plant Sci, 2013. 4: p. 416
    [PMID:24204368]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Yu YT, et al.
    Overexpression of the MYB37 transcription factor enhances abscisic acid sensitivity, and improves both drought tolerance and seed productivity in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(3): p. 267-79
    [PMID:26646286]