PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001764.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 1593aa MW: 178153 Da PI: 8.8074

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001764.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	28.3	4.1e-09	158	198	2	42
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 ++W++eE+ ++ + ++lG+g+W+ I++ + ++Rt+ q+ s Itr_sc001764.1_g00003.1 158 LAWSEEEHRVFLVGLEKLGKGDWRGISKQFVTTRTPAQLAS 198 68***********************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50158	9.191	3	18	IPR001878	Zinc finger, CCHC-type
SMART	SM00343	0.067	4	20	IPR001878	Zinc finger, CCHC-type
SMART	SM00717	9.8E-5	156	206	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.26E-8	158	204	IPR009057	Homeodomain-like
CDD	cd00167	8.00E-7	159	206	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-8	159	199	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-6	159	198	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	6.47	160	204	IPR017877	Myb-like domain
Pfam	PF14244	1.9E-16	280	326	IPR029472	Gag-polypeptide of LTR copia-type
Pfam	PF14223	2.6E-8	336	483	No hit	No description
SMART	SM00343	2.2	540	556	IPR001878	Zinc finger, CCHC-type
Pfam	PF13976	2.2E-7	764	836	IPR025724	GAG-pre-integrase domain
PROSITE profile	PS50994	17.587	838	1010	IPR001584	Integrase, catalytic core
Gene3D	G3DSA:3.30.420.10	2.2E-26	846	1002	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	3.49E-38	847	1004	IPR012337	Ribonuclease H-like domain
Pfam	PF00665	1.1E-19	852	960	IPR001584	Integrase, catalytic core
Pfam	PF07727	5.1E-81	1131	1345	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	3.56E-31	1134	1325	No hit	No description
SuperFamily	SSF56672	3.56E-31	1355	1536	No hit	No description
CDD	cd09272	3.07E-71	1430	1569	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1593 aa Download sequence Send to blast
MVRKCSNCGR AGHNSRTCNN SCINHHHESK SSTSCSHTIS IKLFGVKLGI SQSSSSPTNI 60 LSSSSSPLTP AASLAAIRKS FSFECLSSPT ITNRGGTAHS GYLSDGLTTR NHHNKKGWTE 120 VVKGQVQHHV TKELLDKAEA VKGQVQHHVA RGLLGEGLAW SEEEHRVFLV GLEKLGKGDW 180 RGISKQFVTT RTPAQLASCY SYFTNHNELN ISFLSKALSA LLASYFSYFI MVSERYRSYA 240 AAVMMEEDGH GIEAENGGTS SNQTATNQHN DQFDDPFFVH ITENPNVSLV SPLLSELNYS 300 SWSRSMKIAL EVKNKFGFVN GSIPSPEEND PKFASWRRCN RIVSSWILRS VNPSIADGVM 360 YFDTASEIWS ALHKRYSQSD PHRISELQNE IYRNVQGNLT VNEYFTKSNA MWQQLNVLRP 420 LLLCECTPRC TCTLLMRMQK EREEDHIIRF LEGLNEEYET VKSGVLVMDP IPDMERVLNM 480 TLKLERKIKG SINQRSNEFT QANAIQNFPN QSTEEQSVVA VSALNNRKKF TNTGGRNVPK 540 CTYCGMLGHT IEKCFKKHGY PPGWVAGYKS KNKQFQDAPQ TSSASVNQVG DIGLSSDQFQ 600 RLVSILQNQN KGSQATSNAV MTVANSGIKS DFKDVEGNQN EGNLIPNLHI NAVLNLNTTW 660 ILDSGATDHI TCSLGYFETY HKIQGISVKL PNEEAVNVNC VGQIRLNENI VLENVLYIPS 720 FTFNIVSVSK LTKQTGCKLV LEADSCNIQG PLGKVDGFAK ERNGLYLISQ PPVVKMKIQS 780 VNKSANIQCN SLIAELWHNR LGHYPVNKIT SLNGIKSDFC YKQSAFVCDA CHLAKHKRSA 840 FPVSISRAEN CFDLIHMDVW GPFAVASLKG EHYFLTIVDD CSRFTWLHLM KTKSEVKGIF 900 QNFYNYVHTQ FTAKIKVVRT DNGSEFLMNS FFNEKGIVHQ KSCVYTPQQN GVAERKHQHV 960 LNVARALRFQ SGLPIKFWGH CVLHASYIIN RLPSDVNGGH APFELLTGKA VDYDQFKSFG 1020 CLCYGATVAQ GRNKFQPRAL RCVFLGFPAN VKGYILYDIT NSTVFVSRDV KFQEQIYPFK 1080 GQGPGVTAEF NKDERVIPSL PLVPTSVETD SFLEPVSRSG SEILAEEPVS RSGSVERYKA 1140 RLVAKGYTQQ LGVDYIETFS PVARMTTIKT FLAVAVAKGW DIQQLDINNA FLHGDLEEEV 1200 YMVLPPGFKS DRPNQVCKLL RSLYGLKQAS RQWNAKLTKF LQNNGFQQST ADPSLFTKTS 1260 QHSFMALLVY VDDILVAGTD NTQITKLKQL LDTSFRIKDL GKLNYFLGIE ASRNSSGLNL 1320 CQKKYTLEIL QENGFLDAKP AKTPCVPGQR LTHTDGMLLD RPDTFRRLVG KLMYLTNTRP 1380 DICYAVQQLS QFVDKPRDTH LVAAHRVLRY LKGAPGKGLF YDSKSQIKLQ GFSDSDWATC 1440 AETRKSITGY CVYLGESLIS WKTKKQATVS RSSSEAEYRA LASTVCEIQW LLYLLADLKA 1500 DSSIPIPLFC DNNSAVAIGE NYVFHERTKH IEIDCHVVRQ KVHEGVIKLL SIPSHKQIAD 1560 GFTKALTTPL FDTFHSKLGL QDLHAPAYGG MMK

Sequence ? help Back to Top

Protein Sequence Length: 1593 aa Download sequence Send to blast

MVRKCSNCGR AGHNSRTCNN SCINHHHESK SSTSCSHTIS IKLFGVKLGI SQSSSSPTNI  60
LSSSSSPLTP AASLAAIRKS FSFECLSSPT ITNRGGTAHS GYLSDGLTTR NHHNKKGWTE  120
VVKGQVQHHV TKELLDKAEA VKGQVQHHVA RGLLGEGLAW SEEEHRVFLV GLEKLGKGDW  180
RGISKQFVTT RTPAQLASCY SYFTNHNELN ISFLSKALSA LLASYFSYFI MVSERYRSYA  240
AAVMMEEDGH GIEAENGGTS SNQTATNQHN DQFDDPFFVH ITENPNVSLV SPLLSELNYS  300
SWSRSMKIAL EVKNKFGFVN GSIPSPEEND PKFASWRRCN RIVSSWILRS VNPSIADGVM  360
YFDTASEIWS ALHKRYSQSD PHRISELQNE IYRNVQGNLT VNEYFTKSNA MWQQLNVLRP  420
LLLCECTPRC TCTLLMRMQK EREEDHIIRF LEGLNEEYET VKSGVLVMDP IPDMERVLNM  480
TLKLERKIKG SINQRSNEFT QANAIQNFPN QSTEEQSVVA VSALNNRKKF TNTGGRNVPK  540
CTYCGMLGHT IEKCFKKHGY PPGWVAGYKS KNKQFQDAPQ TSSASVNQVG DIGLSSDQFQ  600
RLVSILQNQN KGSQATSNAV MTVANSGIKS DFKDVEGNQN EGNLIPNLHI NAVLNLNTTW  660
ILDSGATDHI TCSLGYFETY HKIQGISVKL PNEEAVNVNC VGQIRLNENI VLENVLYIPS  720
FTFNIVSVSK LTKQTGCKLV LEADSCNIQG PLGKVDGFAK ERNGLYLISQ PPVVKMKIQS  780
VNKSANIQCN SLIAELWHNR LGHYPVNKIT SLNGIKSDFC YKQSAFVCDA CHLAKHKRSA  840
FPVSISRAEN CFDLIHMDVW GPFAVASLKG EHYFLTIVDD CSRFTWLHLM KTKSEVKGIF  900
QNFYNYVHTQ FTAKIKVVRT DNGSEFLMNS FFNEKGIVHQ KSCVYTPQQN GVAERKHQHV  960
LNVARALRFQ SGLPIKFWGH CVLHASYIIN RLPSDVNGGH APFELLTGKA VDYDQFKSFG  1020
CLCYGATVAQ GRNKFQPRAL RCVFLGFPAN VKGYILYDIT NSTVFVSRDV KFQEQIYPFK  1080
GQGPGVTAEF NKDERVIPSL PLVPTSVETD SFLEPVSRSG SEILAEEPVS RSGSVERYKA  1140
RLVAKGYTQQ LGVDYIETFS PVARMTTIKT FLAVAVAKGW DIQQLDINNA FLHGDLEEEV  1200
YMVLPPGFKS DRPNQVCKLL RSLYGLKQAS RQWNAKLTKF LQNNGFQQST ADPSLFTKTS  1260
QHSFMALLVY VDDILVAGTD NTQITKLKQL LDTSFRIKDL GKLNYFLGIE ASRNSSGLNL  1320
CQKKYTLEIL QENGFLDAKP AKTPCVPGQR LTHTDGMLLD RPDTFRRLVG KLMYLTNTRP  1380
DICYAVQQLS QFVDKPRDTH LVAAHRVLRY LKGAPGKGLF YDSKSQIKLQ GFSDSDWATC  1440
AETRKSITGY CVYLGESLIS WKTKKQATVS RSSSEAEYRA LASTVCEIQW LLYLLADLKA  1500
DSSIPIPLFC DNNSAVAIGE NYVFHERTKH IEIDCHVVRQ KVHEGVIKLL SIPSHKQIAD  1560
GFTKALTTPL FDTFHSKLGL QDLHAPAYGG MMK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166977.1	0.0	PREDICTED: uncharacterized protein LOC109162749

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56840.1	3e-20	MYB_related family protein