PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001761.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 332aa MW: 36592.4 Da PI: 6.4298

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001761.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.1e-14	43	92	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P+ ++K + a+ L ++++Y++ Lq Itr_sc001761.1_g00006.1 43 RSKHSVTEQRRRSKINERFQILRDLIPNT----DQKRDTASFLLEVIQYVQFLQ 92 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.0E-23	39	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-19	39	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.247	41	91	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.94E-14	43	96	No hit	No description
Pfam	PF00010	4.8E-12	43	92	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-12	47	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MKTVKSHEEE EEEEELGSRK DATNSNSNTS RDGKNSDKAN AIRSKHSVTE QRRRSKINER 60 FQILRDLIPN TDQKRDTASF LLEVIQYVQF LQEKVQKYEG SYQAWSSEPT KLMPWRNSHW 120 RMQSFVGSPQ IVKNGTGPGP TYAGRLDENP VTVPSAMQPI QQNPVESHPI SDSAFNAVDP 180 HNELATKAVT TPMTLQASLP AAVQNEGSYS HTTPRPASDA QSNECPNRIE ALSHHEESTI 240 EGGTISISSV YSQGLLNSLA QALQSTGVDL SQATISVQIN LGKRADRGLN SSVMVARDTN 300 EKPAPSVCPA VGHFRDTSTD DGLDQAQKRL RI

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164681.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164682.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164683.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164684.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Refseq	XP_019164685.1	0.0	PREDICTED: transcription factor BIM2 isoform X1
Swissprot	Q9CAA4	2e-95	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A1J6ITG6	1e-154	A0A1J6ITG6_NICAT; Transcription factor bim2
STRING	XP_009594832.1	1e-155	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4426	23	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-84	BES1-interacting Myc-like protein 2

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]