PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001755.1_g00003.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 634aa MW: 73383.8 Da PI: 8.2468

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001755.1_g00003.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.9	6.1e-17	54	147	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtk 80 kfY +YA+ +GF++r+s++ k+ + g +k+ +vCs+e ++e ++++ ++ +r+r+++r+gC a++ +++ +++ev + Itr_sc001755.1_g00003.1 54 KFYIKYASAAGFDMRRSTEIKN-KYGVSMKKYLVCSQERYKEAKDTDlmesgaPTHPKRRRTSNRVGCIARIIFRLN-GEVYEVVS 137 6***************9999.777799999*********999999998889999***************.**** PP FAR1 81 leleHnHela 90 +e+ H+H+l+ Itr_sc001755.1_g00003.1 138 FEERHTHDLC 147 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-14	54	147	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-29	289	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.262	570	606	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.0E-5	570	598	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.9E-4	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MSSSNTGASD HTVEMQTCDM EESADVPKYW MTTCDPSLKP VVGQRFESLE SGIKFYIKYA 60 SAAGFDMRRS TEIKNKYGVS MKKYLVCSQE RYKEAKDTDL MESGAPTHPK RRRTSNRVGC 120 IARIIFRLNG EVYEVVSFEE RHTHDLCGDS YKPFMKMNRK LDIGHQHFIA NCAKGNIGPS 180 KTFNLYAEMV GETNKVGAMQ QDFKNYKREI LAYMKGGGGX XXXXXXXXXX XXXXXXGGDV 240 QMVLSNYIEK KSYCDDFYFE YEVNEKDQLS RVFWVDGVAR KQFSVFGEVM TFDATYQTNK 300 YKLVFVPFTG VDHHKRCVTF VAGLIAREDE DSYRWILINF KKAMGKTPPI TITDQDTAMK 360 VAIAMEFPET RHRFCMWHIM TKVGDKVGAE MAKNTEFRRV LNSVVWNEIC MPEEFENCWN 420 SVVYTYGLQE NGWLKLMYEQ RESWIPAYFQ DMFMGGLLRT TSRSESENNV FRSNTSKHMC 480 LVDFFYQFER TINRQRSKQA ELDATCNGHL PALKTPLSVE REAASIYTLA IFYQLQGEII 540 GACFFCRVRS FAVSEPIRTY MIEDDKGKSY TVVVENGSNN ISCTCRMYRR IGLLCRHAFV 600 ILKDERFDHI PAQHITPRWK IELGNSEIVI IKRK

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MSSSNTGASD HTVEMQTCDM EESADVPKYW MTTCDPSLKP VVGQRFESLE SGIKFYIKYA  60
SAAGFDMRRS TEIKNKYGVS MKKYLVCSQE RYKEAKDTDL MESGAPTHPK RRRTSNRVGC  120
IARIIFRLNG EVYEVVSFEE RHTHDLCGDS YKPFMKMNRK LDIGHQHFIA NCAKGNIGPS  180
KTFNLYAEMV GETNKVGAMQ QDFKNYKREI LAYMKGGGGX XXXXXXXXXX XXXXXXGGDV  240
QMVLSNYIEK KSYCDDFYFE YEVNEKDQLS RVFWVDGVAR KQFSVFGEVM TFDATYQTNK  300
YKLVFVPFTG VDHHKRCVTF VAGLIAREDE DSYRWILINF KKAMGKTPPI TITDQDTAMK  360
VAIAMEFPET RHRFCMWHIM TKVGDKVGAE MAKNTEFRRV LNSVVWNEIC MPEEFENCWN  420
SVVYTYGLQE NGWLKLMYEQ RESWIPAYFQ DMFMGGLLRT TSRSESENNV FRSNTSKHMC  480
LVDFFYQFER TINRQRSKQA ELDATCNGHL PALKTPLSVE REAASIYTLA IFYQLQGEII  540
GACFFCRVRS FAVSEPIRTY MIEDDKGKSY TVVVENGSNN ISCTCRMYRR IGLLCRHAFV  600
ILKDERFDHI PAQHITPRWK IELGNSEIVI IKRK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	114	PKRRRTS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188974.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-80	FAR1-related sequence 5