PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001730.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 350aa MW: 39410.2 Da PI: 4.929

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001730.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	70.9	1.7e-22	257	306	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d + y +lpi++AA+ +++c+Tv+K+iCR+ G+ RWP+Rki+s+ Itr_sc001730.1_g00006.1 257 GKLRLKDFAGYLHLPIEEAARRMNICPTVMKKICRRDGLLRWPYRKIRSI 306 68999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.108	246	328	IPR003035	RWP-RK domain
Pfam	PF02042	7.0E-20	259	306	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MADPSATLGS AFFPYYDHHH PFDHHLPFDQ IPFFSPPELE TTTLQPQSDF SFDGGDYADN 60 NIVCPSHLLE DPVVSTTFGE VKDVPQVWSD VENPTPISAW PPAMASICNN SCQVLREITH 120 TNGLYIWRLE IHGGLGMIAH VVLEKCSLDF SSQNPEYQTF DFSQESMSAV KQFLVGYFED 180 RKREGYVVLE DPLWEFYEAL SVGHGGGEHM DIDTFFQLPP TTHSGNYNEE AEIGGGGGGV 240 EVKAQKIPLS AQRERTGKLR LKDFAGYLHL PIEEAARRMN ICPTVMKKIC RRDGLLRWPY 300 RKIRSIHGKI SNRSKTLSAG NLDAQERERA QADILDLQQQ LATISEAFFD

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MADPSATLGS AFFPYYDHHH PFDHHLPFDQ IPFFSPPELE TTTLQPQSDF SFDGGDYADN  60
NIVCPSHLLE DPVVSTTFGE VKDVPQVWSD VENPTPISAW PPAMASICNN SCQVLREITH  120
TNGLYIWRLE IHGGLGMIAH VVLEKCSLDF SSQNPEYQTF DFSQESMSAV KQFLVGYFED  180
RKREGYVVLE DPLWEFYEAL SVGHGGGEHM DIDTFFQLPP TTHSGNYNEE AEIGGGGGGV  240
EVKAQKIPLS AQRERTGKLR LKDFAGYLHL PIEEAARRMN ICPTVMKKIC RRDGLLRWPY  300
RKIRSIHGKI SNRSKTLSAG NLDAQERERA QADILDLQQQ LATISEAFFD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188885.1	0.0	PREDICTED: uncharacterized protein LOC109183155
TrEMBL	A0A328D0U6	1e-112	A0A328D0U6_9ASTE; Uncharacterized protein
STRING	XP_009771409.1	1e-105	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-10	RWP-RK domain-containing protein