PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001705.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 304aa MW: 33696.9 Da PI: 8.3953

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001705.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.5	5e-19	35	126	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fY++YA +vGF+ r+sk++k r++ ++ ++ vCs+eg++++++++ ++ +r+r+++r+ Ckak++ k+ +g ++v+ le Itr_sc001705.1_g00006.1 35 FYKQYAGSVGFDCRQSKTQKG-RDDVVVLKHVVCSREGFKQSSSSTssstqSTAVKRRRVTNRVWCKAKVVFKLIPNGCYVVQFLE 119 9*************99998.67779999********99998888777778899*********************** PP FAR1 83 leHnHel 89 + H+H++ Itr_sc001705.1_g00006.1 120 ERHTHSM 126 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-16	35	126	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.2E-11	186	243	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MNLDSTSGGC DEVCADRLKP HMGQQFDFLD GAFGFYKQYA GSVGFDCRQS KTQKGRDDVV 60 VLKHVVCSRE GFKQSSSSTS SSTQSTAVKR RRVTNRVWCK AKVVFKLIPN GCYVVQFLEE 120 RHTHSMLFKE IVGEYSNVGA TNTLFKRREL CESFGLEYDV DEGDQLSRVF FTDAVSKKNF 180 SLFGDVVSFD ATYHTNRYHL VFVPFTGIDN HKTCVTFGVG LLTRDGIDSY VWLVGRALSH 240 LPNAIPNHVA VRSYATVTPL RQSLTHLPSA TGPPPTDPPP PTASTQQRRH PPDSAESPTA 300 GNTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	88	92	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019158566.1	8e-95	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A484MZF6	2e-63	A0A484MZF6_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3136	2	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-18	far-red elongated hypocotyls 3