PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001678.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 278aa    MW: 31488 Da    PI: 6.544
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001678.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-27959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             k ien  nrqvtfskRr g+ KKA ELS+LCdaevavi+fsstgkl+e+ss
  Itr_sc001678.1_g00001.1  9 KLIENINNRQVTFSKRRGGLVKKARELSILCDAEVAVIVFSSTGKLFEFSS 59
                             569**********************************************96 PP
2K-box57.17.7e-2084176899
                    K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                                +e++  +  + e++ L +ei++L+++q  +lG+dL+ + l+eL++Le++L+++l  i+s+K+++l+eq+e++qk+e+ +   n 
  Itr_sc001678.1_g00001.1  84 PlVEKKPKQLEHMEVEVLSDEISKLKSKQLMFLGKDLKGMGLNELRELEHELHEGLLGIKSRKEQILMEQLEHSQKQEELALLVND 169
                              4456666777789************************************************************************* PP

                    K-box  93 aLrkkle 99 
                              +Lr+++e
  Itr_sc001678.1_g00001.1 170 QLRREIE 176
                              ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.0E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.23161IPR002100Transcription factor, MADS-box
CDDcd002658.10E-38281No hitNo description
SuperFamilySSF554551.96E-29279IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.82191181IPR002487Transcription factor, K-box
PfamPF014866.6E-1492175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRGKIDIKL IENINNRQVT FSKRRGGLVK KARELSILCD AEVAVIVFSS TGKLFEFSST  60
RFAGNCMEQT LSRYNKRIKS SGMPLVEKKP KQLEHMEVEV LSDEISKLKS KQLMFLGKDL  120
KGMGLNELRE LEHELHEGLL GIKSRKEQIL MEQLEHSQKQ EELALLVNDQ LRREIEGFRG  180
FYYPLSATVP APSIEYCPTE NNVSSGKDGV ESQDIGSDGG FENENSDTTL QLGLAMGGYR  240
KRKTPEPETR STSLKLARGN EVDLAEQFIM KIQEWEEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-18174169MEF2C
5f28_B1e-18174169MEF2C
5f28_C1e-18174169MEF2C
5f28_D1e-18174169MEF2C
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019157010.11e-147PREDICTED: MADS-box transcription factor 23-like isoform X2
TrEMBLA0A2U8UAC71e-103A0A2U8UAC7_IPOBA; MBP5
STRINGXP_009592797.11e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87752226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-54AGAMOUS-like 15