PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001670.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 271aa    MW: 29660.6 Da    PI: 10.0208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001670.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002299121123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C++C + F ++  L  H++ H
  Itr_sc001670.1_g00002.1  99 FSCNYCQRKFYSSQALGGHQNAH 121
                              89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-697127No hitNo description
PROSITE profilePS5015711.17799126IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MADSLMEKVE RDVPEAPPLR HEFTLQNSKD HVSVQGKAGD GDGDGQKRDM ICSSRSSDHR  60
GSSELNLIRH LDMKASGVPT DQNLKVDAAA AAAAAPRVFS CNYCQRKFYS SQALGGHQNA  120
HKRERILMKK EQRLGQHFMA AAAAFGRSSI HHRHHYSSIA SLPLHGTLHK PLGIQAHSMM  180
IKPSYMHSSS GIIKRPVFSQ QPAVGKFIGE NNCHITPSAS AALLLKEKIN RPRIVVSSPP  240
GEATIAEGLW TGSSSNHLET NRENLDLSLR L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173753.11e-173PREDICTED: zinc finger protein 1-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.16e-30zinc finger protein 3