PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001662.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GRAS | ||||||||
Protein Properties | Length: 725aa MW: 80423.5 Da PI: 5.9268 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 435.9 | 3.1e-133 | 357 | 724 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.....svselykalppsetseknsseelaal 81 l +lLl cAeavs+++ la+++L +l+ ++p gd+mqR+a++fteAL+arla s +++++ p ++ + ns e l+++ Itr_sc001662.1_g00013.1 357 LLHLLLVCAEAVSKENYMLARRYLHHLNRVVTPLGDSMQRVASCFTEALSARLAAtlasaSAKSISSNRPFNPPYPPNSLEILKIY 442 579*************************************************98731112234444444555555566******** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167 +++++++P++kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+ L++ Itr_sc001662.1_g00013.1 443 QILYQACPYVKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTE 524 ********************************************************************....9************* PP GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 +A++l+vpfef++ v ++l+dl++++++ + gEalaVn v +lhr++ + ++ + +L ++++ P++v++veqea+hn++ F Itr_sc001662.1_g00013.1 525 LAHSLHVPFEFHP-VGEELQDLKPHMFNRRVGEALAVNAVNRLHRVP--PNCMGN----LLGMIRDQAPNIVTIVEQEANHNGPYF 603 *************.7*******************************9..666666....*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 l rfleal+yysa+fdsl+a++p++s++r+kvE+ ++++ei n+vacegaer+ rhe+le+Wr+ +e GFk vpls +a++q + Itr_sc001662.1_g00013.1 604 LGRFLEALHYYSAIFDSLDATFPADSSQRAKVEQYIFAQEIWNIVACEGAERVYRHERLERWRRVMEGKGFKGVPLSANAVTQSNI 689 ************************************************************************************** PP GRAS 340 llrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ll ++ dgyr+ e++g+l+lgW+drp++++SaWr Itr_sc001662.1_g00013.1 690 LLGLYSCDGYRLTEDKGCLLLGWQDRPILAASAWR 724 **********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.357 | 331 | 704 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-130 | 357 | 724 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MMLNTLCGSM GSLSSEVGNL KIEEEPSSVK RENSSLLSSS SSSSTLQHQS DKVPIPVPAP 60 SDYEDHSSVV NGISFPAIKF EVPGGGDDIG IDDQSYWDWE SFFADQLEGD FMISSPVRSN 120 NMAASPQVSS FMNDVQMMIT SPVRNCYHHH QNGITMSPPR MMMMSPLGPG HNNNNNNKGK 180 GLSPLHRVFN SPNAQHLMQM QTHDFSHLPA LDNLLDFDDN HDFSSSYSST LKHLPASTSV 240 LSESLLDCGG LQLPRLHSSS SCSASVSSIQ APPLEADDDI IYRTTTTTTG SLHIAPLSHQ 300 LREERNQEQQ HHHNNNNNNI TRSGQHLHSA PLVLPLSAPP ADLQEEEEEE QDSGLQLLHL 360 LLVCAEAVSK ENYMLARRYL HHLNRVVTPL GDSMQRVASC FTEALSARLA ATLASASAKS 420 ISSNRPFNPP YPPNSLEILK IYQILYQACP YVKFAHFTAN QAIFEAFEAE ERVHVIDLDI 480 LQGYQWPAFM QALAARPGGA PFLRITGVGP SPEAVRETGR CLTELAHSLH VPFEFHPVGE 540 ELQDLKPHMF NRRVGEALAV NAVNRLHRVP PNCMGNLLGM IRDQAPNIVT IVEQEANHNG 600 PYFLGRFLEA LHYYSAIFDS LDATFPADSS QRAKVEQYIF AQEIWNIVAC EGAERVYRHE 660 RLERWRRVME GKGFKGVPLS ANAVTQSNIL LGLYSCDGYR LTEDKGCLLL GWQDRPILAA 720 SAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-97 | 338 | 723 | 1 | 377 | Protein SCARECROW |
5b3h_D | 3e-97 | 338 | 723 | 1 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019183968.1 | 0.0 | PREDICTED: protein SCARECROW-like | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A1S4C8Z1 | 0.0 | A0A1S4C8Z1_TOBAC; DELLA protein RGL2-like | ||||
TrEMBL | A0A1U7YX55 | 0.0 | A0A1U7YX55_NICSY; DELLA protein RGL2-like | ||||
STRING | XP_009803754.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12566 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-94 | RGA-like 1 |
Publications ? help Back to Top | |||
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