PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001641.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 315aa MW: 33987.8 Da PI: 8.3209

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001641.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	106	150	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Itr_sc001641.1_g00005.1 106 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 150 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.997	99	155	IPR017930	Myb domain
SuperFamily	SSF46689	4.93E-17	101	156	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.7E-17	102	153	IPR006447	Myb domain, plants
SMART	SM00717	1.8E-10	103	153	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-11	105	150	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-11	106	150	IPR001005	SANT/Myb domain
CDD	cd00167	1.90E-9	106	151	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MATRCCTQYG SNGHNSRSCG ESSSVSAASG GSGEIMLFGV RVKVDPMRKS VSLNNLSQYE 60 QPNDDNKNSG NNDSTKAAAA DEGYASADDA VPNQSSSGRE RKRGVPWTEE EHKLFLLGLQ 120 KVGKGDWRGI SRNFVKTRTP TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TESVSPYSMD 180 EGKASQESQV PPVVSPTSLS ISESSQMNAF QGPPIPVTAC PVFVPLQNEK PIENLMLGRG 240 DQVNNASSMF VQPLSILSVP NASTMIDLNM NQNSTMDPSS LSLRLSLSGD QSQPTHPAFL 300 GMSGFSNGDS VISVA

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154449.1	0.0	PREDICTED: transcription factor MYB1R1-like
Refseq	XP_019154450.1	0.0	PREDICTED: transcription factor MYB1R1-like
Swissprot	Q2V9B0	2e-95	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A2I4SCV0	1e-108	A0A2I4SCV0_LYCBA; MYB1R1
STRING	XP_009760664.1	1e-102	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	4e-48	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]