PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001632.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 30385.3 Da PI: 6.8016 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.3 | 9.9e-29 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++nrqvtfskRrng+lKKA+EL +LCdaev +iifsstgkl+e++s Itr_sc001632.1_g00004.1 10 RIDNSTNRQVTFSKRRNGLLKKAKELGILCDAEVGLIIFSSTGKLHEFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 65 | 2.6e-22 | 118 | 194 | 19 | 96 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +e+a L+++++n+q+ +R+l+Ge L L +k+Lq+Le+qLe sl+ iR kK+++l++qi+el +k +++en +L Itr_sc001632.1_g00004.1 118 HEAAILRQQLHNMQEDHRKLMGE-LYGLGVKDLQNLENQLEMSLRGIRMKKEQILIDQIQELTHKGSFIHQENLELFD 194 799*******************8.9************************************************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.931 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.9E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 8.21E-46 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 8.63E-32 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.986 | 113 | 203 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.1E-21 | 117 | 195 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MGRGKVVIRR IDNSTNRQVT FSKRRNGLLK KAKELGILCD AEVGLIIFSS TGKLHEFASS 60 SMRSVIERYN KAQDESVQSP QNPASELKVK AQPISPGPRT DLEASTGSPL YLARALFHEA 120 AILRQQLHNM QEDHRKLMGE LYGLGVKDLQ NLENQLEMSL RGIRMKKEQI LIDQIQELTH 180 KGSFIHQENL ELFDKAYGTR DPNAVNGDTI SPYDLSISEE SHGHIHLQLS QPQLQNFSDL 240 ARALDSTQVG DALCRTELER EGSQQELTIA S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 2e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 2e-20 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 2e-20 | 1 | 69 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ237529 | 1e-130 | FJ237529.1 Ipomoea batatas cultivar Jinhongmi MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019172965.1 | 1e-140 | PREDICTED: MADS-box transcription factor 23-like isoform X7 | ||||
Swissprot | Q6EP49 | 1e-80 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | D5FI33 | 1e-117 | D5FI33_IPOBA; MADS-box protein | ||||
STRING | XP_009623629.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 1e-78 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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