PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001610.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 170aa MW: 18952.5 Da PI: 6.4292 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 26.1 | 2.8e-08 | 72 | 107 | 56 | 91 |
FAR1 56 aetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 rtgC a ++ + +g+w vtk e+ HnHel++ Itr_sc001610.1_g00005.1 72 IDLRTGCVAFVQFDVDGNGVWTVTKHEKSHNHELCT 107 5679******************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.0E-6 | 73 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MAEAVDQLVN ADLVVVSASI DQGDLIVEDS SSIPVDHDLV GIVVSNADEA YELYNDYAYR 60 VVLVLGRAYS KIDLRTGCVA FVQFDVDGNG VWTVTKHEKS HNHELCTLDK SHLLRSHRRV 120 KNNQLSYLRD LKKNGVALAD GIRFLKHQSG GLHSLGSPIE MLTIHWHLIH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019188786.1 | 8e-70 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14143 | 2 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-08 | FAR1-related sequence 5 |