PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001598.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family BES1
Protein Properties Length: 347aa    MW: 37422.8 Da    PI: 8.0396
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001598.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822180.11e-5521661148
                   DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr................ 70 
                              ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyr                
  Itr_sc001598.1_g00006.1   2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRkvgrklagitcaggld 87 
                              5899*********************************************************************************9 PP

                   DUF822  71 .....kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvs 147
                                    g+kp+e+++++gss s+sp+ss+q        +s+ +sy++sp+sssfpsp+s+  i+++++    +sl+p+l++ls+ s
  Itr_sc001598.1_g00006.1  88 lcdlcGGCKPTERMDIMGSSVSVSPCSSYQ--------PSQGPSYNPSPASSSFPSPVSSRYITNNNNdtdpNSLIPWLKNLSSGS 165
                              999999************************........9*********************999998889999*********99844 PP

                   DUF822 148 s 148
                              s
  Itr_sc001598.1_g00006.1 166 S 166
                              3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.2E-633162IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCKEAG  60
WIVEEDGTTY RKVGRKLAGI TCAGGLDLCD LCGGCKPTER MDIMGSSVSV SPCSSYQPSQ  120
GPSYNPSPAS SSFPSPVSSR YITNNNNDTD PNSLIPWLKN LSSGSSPSSS KLPHHLYIPG  180
GSISAPVTPP LSSPTARTPR MNDNWDDPKV NSAWPNQHYA FLPSSTPQSP GCLTPPDSGW  240
LSGVQTPQDG PSSPTFSLVS PNPFGFKEPL SNGGSRMWTP GQSGTCSPAV AAALDRSSDV  300
PMSDAIQSEF AFGCNAKGIV KPWEGERIHE ECITDDLELT LGNSNTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A5e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B5e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C5e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D5e-20672372438Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7214902e-59KP721490.1 Eucalyptus grandis brassinazole-resistant 1 protein (BES3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019169393.10.0PREDICTED: BES1/BZR1 homolog protein 4-like isoform X1
RefseqXP_019169394.10.0PREDICTED: BES1/BZR1 homolog protein 4-like isoform X2
SwissprotQ9ZV881e-120BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A2G9HVA01e-172A0A2G9HVA0_9LAMI; Uncharacterized protein
STRINGXP_009590977.11e-164(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19842464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-100BES1/BZR1 homolog 4