PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001571.1_g00011.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 145aa MW: 16449.4 Da PI: 10.0198

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001571.1_g00011.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.3e-19	10	70	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++L +l+++ r+ps++e++ ++++l +++e++V++WFqN++ +e++ Itr_sc001571.1_g00011.1 10 TRWNPTPEQLQILRDLYHNhgMRNPSQQEIRGITQRLsqygKIEEKNVFYWFQNQKGRERQ 70 8***************8789**********************************996 PP
2	Wus_type_Homeobox	103.9	1e-33	9	71	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+PtpeQ++iL++ly+ +G+r+P+++ei+ it++L++yGkie+kNVfyWFQN+k Rerq+ Itr_sc001571.1_g00011.1 9 STRWNPTPEQLQILRDLYHnHGMRNPSQQEIRGITQRLSQYGKIEEKNVFYWFQNQKGRERQQ 71 79**************979**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	7.1E-4	7	75	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	10	70	IPR001356	Homeobox domain
CDD	cd00086	1.86E-7	10	72	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-8	10	71	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-13	10	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.592	15	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MDAEYTYVST RWNPTPEQLQ ILRDLYHNHG MRNPSQQEIR GITQRLSQYG KIEEKNVFYW 60 FQNQKGRERQ QKKRLAKLAT EAAGPQDLQQ QATVGGSGGH AAKHPMLETL PLFPIQSDRA 120 GKSKADTSSS QPSLELTLRP YSPAP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596671.1	2e-25	protein WUSCHEL-like
Swissprot	Q8LL11	2e-25	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A1D6WI84	9e-25	A0A1D6WI84_9SOLA; Wuschel (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	9e-26	WUSCHEL related homeobox 5

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]