PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001554.1_g00004.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 315aa MW: 35771 Da PI: 8.5362

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001554.1_g00004.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29	3.5e-09	57	122	33	89
FAR1 33 fvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 Cs+eg+++ ++++ ++ ++r+r+++ tgCka+++ k + ++v+++e+ HnH + Itr_sc001554.1_g00004.1 57 ILCSREGYKNVTDSStlnvdeessSSFTKRRRVSNMTGCKARIVFKFIGSLGYVVKQCEKRHNHCI 122 57*****9999999999998877778889*******************************76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-7	57	122	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-26	190	281	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MDGVPSSSLN GVTSGTNLNT SNANSSNIEG GYSLDISPRM TEYWIPNCED GSKLKYILCS 60 REGYKNVTDS STLNVDEESS SSFTKRRRVS NMTGCKARIV FKFIGSLGYV VKQCEKRHNH 120 CISSVLAKQF LKVNRNIDVG HQKFIANCAT NVDFKNFNRD IRAYIIDEHL CKLFWADPVS 180 RKNFGCFGDV VSFDAMYQTN MYDMVFTPFT RIDNHKRSIT FAAGLLTKED IASYVWLFEH 240 FKKAMVAEPK VIVIDQDPTM RQAIPAVFKE ARHRFCMWHI MCKVGEKVGS VLRCVRLDWC 300 FGWTGEPGWT GVMDG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	88	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019164429.1	1e-100	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_019194883.1	1e-101	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A484LBC4	2e-78	A0A484LBC4_9ASTE; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12684	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-33	FAR1-related sequence 5