PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001550.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | FAR1 | ||||||||
Protein Properties | Length: 242aa MW: 26926.8 Da PI: 8.7714 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 47.2 | 7.2e-15 | 46 | 127 | 1 | 71 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkke 71 +fY++YA +vGF++r s+ ks r+g++++++ vCs+eg++++ ++ ++ +r+r+++rtgC+a+++ k + Itr_sc001550.1_g00002.1 46 EFYKNYAAKVGFDTRFSSVVKS-RDGTTVTKHIVCSREGFKNSGVQHsnsksntdagegSSIPKRRRVSNRTGCRARIVFKYK 127 6********************9.77779999**********9998887888888888877777889************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-12 | 46 | 127 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSPNKNSDAC SLSISLEMTQ YWTPHCEDEI KPLVGMSFTT LESATEFYKN YAAKVGFDTR 60 FSSVVKSRDG TTVTKHIVCS REGFKNSGVQ HSNSKSNTDA GEGSSIPKRR RVSNRTGCRA 120 RIVFKYKLEV LVMRYSMVFT PFIGVGNHKK CVTFGAGLLL KEDIVICHID AKNNIDNEGY 180 VPELKTLLGL EKHASTLYTI TVFYQIQVEI CASCFTYRVL SVREDTGLAG EISSRLCLGN 240 SK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 111 | KRRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019178624.1 | 2e-60 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 9e-12 | FAR1-related sequence 12 |