PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001548.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 332aa    MW: 37421.9 Da    PI: 7.5525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001548.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-171360148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+l++  + +G g+W+++++  g+ R++k+c++rw +yl
  Itr_sc001548.1_g00009.1 13 RGLWSPEEDEKLIKHLATHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                             788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1666109146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Itr_sc001548.1_g00009.1  66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                              89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-26563IPR009057Homeodomain-like
PROSITE profilePS5129418.346860IPR017930Myb domain
SuperFamilySSF466897.11E-2911107IPR009057Homeodomain-like
SMARTSM007177.3E-141262IPR001005SANT/Myb domain
PfamPF002496.1E-161360IPR001005SANT/Myb domain
CDDcd001675.16E-121660No hitNo description
PROSITE profilePS5129426.13661115IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2564115IPR009057Homeodomain-like
SMARTSM007176.4E-1665113IPR001005SANT/Myb domain
PfamPF002492.5E-1566109IPR001005SANT/Myb domain
CDDcd001671.06E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MGHHCCGKHK VKRGLWSPEE DEKLIKHLAT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLSS NQAKINNNKN NKPINSQHFT VDQNSSPPKD EPHIPLDLKA SIAALTCIPN  180
NEPHNKYPFK FKYGPTGGYQ YQNPSQNQLV TGFGTSCSSV ESTSNNLSSS PSSSLNPVPG  240
LGAMNAENSM WGAGLFEPQF GPDRFFHHHQ QQQELYKVNT EFCSNNVQNM EMVKMFDDSS  300
DFDFDFGDDS ALLPFAVYCD ANSMDQLAWD NC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160424.11e-174PREDICTED: myb-related protein 308-like
TrEMBLA0A2G2XFF51e-111A0A2G2XFF5_CAPBA; Transcription factor MYB26
STRINGXP_009589329.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-84myb domain protein 67