PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001546.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 31781.5 Da PI: 5.0269 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.1e-20 | 79 | 129 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p+ r r +lg++gta eAa a+++a+++++g Itr_sc001546.1_g00005.1 79 CNYRGVRQRT-WGKWVAEIRVPK----RgSRLWLGTYGTALEAALAYDEAARAMYG 129 56*****999.**********83....46************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.7E-14 | 79 | 129 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.61E-29 | 79 | 138 | No hit | No description |
SMART | SM00380 | 1.6E-34 | 80 | 143 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 80 | 137 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.732 | 80 | 137 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 80 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-9 | 103 | 119 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MVILDDRVSN VGSLPLDKRK TRKRKDGPKN VAETLAKWKE YNEKLDFMEE GGKRVRKAPA 60 KGSKKGCMKG KGGPENVRCN YRGVRQRTWG KWVAEIRVPK RGSRLWLGTY GTALEAALAY 120 DEAARAMYGP CARLNLPNYT KTECSCLPSA SASDSTVASS LCEIETEAAA SSNIEHGDSR 180 GESRNKAPLH SDKGDGGEAR TEEPSDVTAS LDFSWDEMFD VDDILGVLNT PLNVPGVSPG 240 ARSLEDLQQL EQQAPAMDLS FLNQERQDDS LFNLDDAGFL DFNSELGIW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 80 | 137 | 5 | 63 | ATERF1 |
3gcc_A | 2e-15 | 80 | 137 | 5 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 25 | RKTRKRKD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019158214.1 | 1e-153 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A1S3ZB33 | 5e-78 | A0A1S3ZB33_TOBAC; dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | M1C7N5 | 3e-78 | M1C7N5_SOLTU; Uncharacterized protein | ||||
STRING | XP_009594350.1 | 8e-79 | (Nicotiana tomentosiformis) | ||||
STRING | PGSC0003DMT400061541 | 5e-79 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.1 | 1e-33 | DRE-binding protein 2A |