PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001543.1_g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | C2H2 | ||||||||
Protein Properties | Length: 237aa MW: 25819.9 Da PI: 9.8117 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00039 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C + F ++ L H++ H Itr_sc001543.1_g00010.1 61 FACNYCRRKFYSSQALGGHQNAH 83 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.08E-6 | 57 | 89 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 61 | 88 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MESRQEEREK DQEVEGEERR GGVLLDLSLS RRESSDKTPP APADEFRGPK ASSETTEPRV 60 FACNYCRRKF YSSQALGGHQ NAHKRERTMA KRGQKMLAAA AAFGYDAPMH RYPSMASLPL 120 HGSFNRSLGI QAHSMIHKPA GGYFGAPAAG AGPQPIYGFN GWPRRPLNQQ PAVGRLPTEC 180 LGSSSNSGAA RFDSEAKFPP VVDGGIRWDS VGRGGGASHI KINNQDELNK LDLSLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019167337.1 | 1e-146 | PREDICTED: zinc finger protein 3-like | ||||
Refseq | XP_019167338.1 | 1e-146 | PREDICTED: zinc finger protein 3-like | ||||
TrEMBL | A0A1S3ZJR7 | 4e-68 | A0A1S3ZJR7_TOBAC; zinc finger protein 3-like | ||||
STRING | XP_009623268.1 | 1e-68 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5827 | 22 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 1e-40 | zinc finger protein 3 |