PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001509.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 194aa MW: 20850.7 Da PI: 10.6332 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 66.8 | 7.4e-21 | 1 | 123 | 38 | 135 |
TCP 38 eLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssasnsssg..............kaaksaaksk 98 +LGfdk+skt++WLl ++ aik+l ++ +ss secea+s + ++++ a++++ k Itr_sc001509.1_g00008.1 1 MLGFDKASKTVDWLLLKSRLAIKDLKQQnhcaaagggasAASSTSECEAASGVLDQEFEPPMggdnvaaagklpkmGAKEKKGAAK 86 8***************************9999999977555555788888888888843333677777899999975555555778 PP TCP 99 ksqksaasalnlakesrakarararertrekmriknk 135 + + a+++ l+kesr+kar+rarert+ km++kn+ Itr_sc001509.1_g00008.1 87 AAGRIRAAFHPLSKESRNKARERARERTKMKMKKKNN 123 888888889************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 16.138 | 1 | 25 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.6E-18 | 1 | 120 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51370 | 10.643 | 100 | 117 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MLGFDKASKT VDWLLLKSRL AIKDLKQQNH CAAAGGGASA ASSTSECEAA SGVLDQEFEP 60 PMGGDNVAAA GKLPKMGAKE KKGAAKAAGR IRAAFHPLSK ESRNKARERA RERTKMKMKK 120 KNNMLGETPP PPQEMGGATH NVKTTNEPPP AAAAEELATS HNWSLSNIFH SHQIAKHLAL 180 RWQSSDSRLS GVRY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019189667.1 | 3e-71 | PREDICTED: transcription factor TEOSINTE BRANCHED 1-like isoform X2 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA34 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 3e-07 | TCP family protein |