PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001504.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | MYB | ||||||||
Protein Properties | Length: 249aa MW: 28102.7 Da PI: 7.5275 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W t ++++g++R++k+c++rw++yl Itr_sc001504.1_g00012.1 14 KGPWSPEEDAKLKSYIQLHGTGgNWITLPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.9e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Itr_sc001504.1_g00012.1 69 GEFTEEEDNIICSLYITIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.37 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.35E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.73E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 22.157 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.18E-9 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIQ LHGTGGNWIT LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTEEEDNIIC SLYITIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGT 120 KLQPSQHHRP ADLYSLPQQT LPYYSDIHNQ PPSLSFKFQC PDDNDLQPHQ NPISATANTA 180 AFSSASSIFS VAASNSQLGF NSFPIELADD LFYGGYDQTQ ESFSYSMELH NLHQEMPPPN 240 ILEGPTYLI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019195591.1 | 1e-126 | PREDICTED: transcription factor RAX1-like | ||||
Swissprot | Q9M2Y9 | 6e-78 | RAX3_ARATH; Transcription factor RAX3 | ||||
TrEMBL | A0A1U7Z7C6 | 2e-80 | A0A1U7Z7C6_NELNU; transcription factor RAX3 | ||||
STRING | XP_010248310.1 | 3e-81 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 1e-74 | myb domain protein 84 |
Publications ? help Back to Top | |||
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