PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001498.1_g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | TCP | ||||||||
Protein Properties | Length: 245aa MW: 25543.9 Da PI: 10.1452 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.5 | 4.9e-38 | 28 | 114 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +a+ + ss+s++ Itr_sc001498.1_g00011.1 28 VVKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStiSASLRTSSSSAP 113 689******************************************************************87754222222222222 PP TCP 86 s 86 s Itr_sc001498.1_g00011.1 114 S 114 2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-34 | 34 | 121 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.675 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSTSVEANAG ALIDPQQLPS SGNGSLAVVK KPPAKDRHSK VDGRGRRIRM PIVCAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSIIAATG TGTIPASFST ISASLRTSSS SAPSLSASLD 120 HKPMAPAPFI LGKRLRTEED GLDDGNKEVV GSAAAGFWAA LPARPDFGQV WSFAAAAAAP 180 HEMVVPTPAA AAAALNSRFF QQQMGEASAA RVGNYLPMAQ GHLNLLASLS GTPPPSSGRR 240 DDDAR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163704.1 | 1e-157 | PREDICTED: transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 6e-87 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A484KX08 | 1e-113 | A0A484KX08_9ASTE; Uncharacterized protein | ||||
STRING | Solyc04g009180.1.1 | 1e-112 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3951 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-77 | TCP family protein |