PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001481.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | Nin-like | ||||||||
Protein Properties | Length: 240aa MW: 27173.7 Da PI: 6.9868 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.9 | 3.1e-26 | 130 | 178 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++++kyF lpi++AAkeL+v+lT+LK++CR+++I+RWPhRkiksl Itr_sc001481.1_g00006.1 130 ALEFDEIQKYFGLPITKAAKELKVGLTALKKRCRELNISRWPHRKIKSL 178 799********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.12 | 108 | 200 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.3E-22 | 131 | 178 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDPTPFNNVV VHPKLENQNA NAAAADWLFF DDYYTNLMAT WEEESGFCES FNNNCGGGVS 60 NILGDLDYDV GDLNVWDYDD PSAAIFQGEE EGRCGSSSGG SNNNNVNDKE TMKRKRKVGS 120 GERCCKKPAA LEFDEIQKYF GLPITKAAKE LKVGLTALKK RCRELNISRW PHRKIKSLTS 180 LIHNIKELGM GNEIEMLEEH KRMVECIPEM ELTERTKKLR QACFKANYKR RKSSLPAPSH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019189025.1 | 1e-127 | PREDICTED: protein RKD2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12143 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 3e-43 | RWP-RK domain-containing protein |