PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001479.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 704aa    MW: 77748.1 Da    PI: 7.7745
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001479.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-24113214199
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD+
  Itr_sc001479.1_g00001.1 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDS 196
                              89****************************997556555..8******************************************** PP

                              EEEEE-SSSEE..EEEEE-S CS
                       B3  80 vvFkldgrsefelvvkvfrk 99 
                              +vF +   +++ l+v+++r+
  Itr_sc001479.1_g00001.1 197 IVFLR--ADNGDLCVGIRRA 214
                              ****3..477888****996 PP
2Auxin_resp109.73.1e-36279362183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                              aa  a+++++FevvY+Pra t+eF+v++++v++a+  +++ G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Itr_sc001479.1_g00001.1 279 AAYLAASGQPFEVVYYPRANTPEFCVRASSVNAAMGLQWCSGLRFKMAFETEDSSRISWfMGTISSVQVADPIHWPNSPWRLLQ 362
                              577899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.7E-38103218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-29110219IPR015300DNA-binding pseudobarrel domain
CDDcd100177.11E-22112213No hitNo description
PROSITE profilePS5086313.169113215IPR003340B3 DNA binding domain
SMARTSM010192.3E-22113215IPR003340B3 DNA binding domain
PfamPF023626.0E-22113214IPR003340B3 DNA binding domain
PfamPF065078.3E-32279362IPR010525Auxin response factor
PROSITE profilePS5174514.85593671IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MESCEEKNCL DSQLWHACAG GMVQMPPVNS KVFYFPQGHA EHTLTNNVDF SMLPKIPALI  60
LCRVGAVKYL ADLESDEVYA KIRLVPIGNN EPDFEDAVLG SSASETAEKP TSFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG ETWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RADNGDLCVG IRRAKRCGNI GLDAPSGWNT GAGSYGGFSA  240
YLREDENRIK RSGINGNPNS SGGGFRERGK VKPKSVIEAA YLAASGQPFE VVYYPRANTP  300
EFCVRASSVN AAMGLQWCSG LRFKMAFETE DSSRISWFMG TISSVQVADP IHWPNSPWRL  360
LQVTWDEPDL LQNVKHVSPW LVELVSNMPM IHLSPFSPPR KKLCLPQDLL IDGQFRIPSF  420
SSNPLGASSH FCCLSDNISA GMQGARHAQF GGQLLDLHLR NKMQLGQLPP SFRQIDSESK  480
VSDGMIKSQK EGNENTSCLL TIGNSAQRSE KTDTVMTPRF LLFGQPILTE QQMSHGCSVD  540
AVSQTSTRKI SRSEMQLQPE RSHIDRKDLR ENLSSPTFFL NQACHVAELG QHTGHCKVSL  600
ESEDVAHTLD LSVLGTYEEL YKKLADMFGI ERSEMLRRII YCDATGALRQ IGDEPFSEFK  660
RKAKRLTISK NAGSSAGRTW VTGFPTGERG LNSSNQAGAL SIFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A5e-71838317353Auxin response factor 1
4ldw_A5e-71838317353Auxin response factor 1
4ldw_B5e-71838317353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3577910.0HM357791.2 Ipomoea nil auxin response factor ARF16 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019199323.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A1S3X1K00.0A0A1S3X1K0_TOBAC; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]