PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001453.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 272aa    MW: 29348 Da    PI: 5.9811
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001453.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.94.4e-302102196
                   DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 
                              +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l++a pe+ r+++++sl+yeA+ r+ +P+yG+ g+++
  Itr_sc001453.1_g00005.1   2 SCNGCRVLRKGCSEKCSIKPCLqwiksPDAQSNATVFLAKFYGRAGLLNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSSGLLW 87 
                              6************************************************************************************* PP

                   DUF260  82 klqqqleqlkaelal 96 
                              ++++ql+q+++e++l
  Itr_sc001453.1_g00005.1  88 SGNWQLCQAAVEAVL 102
                              **********99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.6811107IPR004883Lateral organ boundaries, LOB
PfamPF031954.4E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEKCSIK PCLQWIKSPD AQSNATVFLA KFYGRAGLLN LINAGPEHLR  60
PAIFRSLLYE ACGRIVNPIY GSSGLLWSGN WQLCQAAVEA VLGGAPITKL SPDSAACTMS  120
PSLKACDIRH VSKQEIAGDL HKVKSRGRFK RTAAGKAKQR AGSPDVDDAA RVMWSWSHKE  180
EEEEEDAVGS PSRDSGLSQH ADEQSRGGES GDANCASVET VETSLAKPED ESDVELELTL  240
GWEPMMRHRK STPAEVNEDA GGSVEAACRM EL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168572.10.0PREDICTED: LOB domain-containing protein 41-like
TrEMBLA0A484MEY91e-135A0A484MEY9_9ASTE; Uncharacterized protein
STRINGSolyc03g119530.2.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-79LOB domain-containing protein 41