PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001449.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | LBD | ||||||||
Protein Properties | Length: 138aa MW: 15269.4 Da PI: 7.8119 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.2 | 1.6e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +CaaCk+lrr+C++dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe+ r da++s+vyeA+ar+rdPvyG+v+ i++lqqq Itr_sc001449.1_g00005.1 14 PCAACKLLRRRCSQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQWRGDAVNSMVYEANARVRDPVYGCVAAISSLQQQ 99 7************************************************************************************* PP DUF260 87 leqlkaelallkee 100 +e l+++la +++e Itr_sc001449.1_g00005.1 100 IELLQTQLAIAQAE 113 *********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.332 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-44 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MKECAGRKQG GASPCAACKL LRRRCSQDCV FAPYFPADEP HKFASVHKVF GASNVNKMLQ 60 ELPEQWRGDA VNSMVYEANA RVRDPVYGCV AAISSLQQQI ELLQTQLAIA QAEMVHMRMR 120 HFSADNTAMD SSGNAYDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-47 | 10 | 129 | 7 | 126 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-47 | 10 | 129 | 7 | 126 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975523 | 5e-49 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019163400.1 | 1e-92 | PREDICTED: LOB domain-containing protein 4-like | ||||
Swissprot | Q9SHE9 | 8e-62 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A0A0KBA8 | 3e-76 | A0A0A0KBA8_CUCSA; Uncharacterized protein | ||||
STRING | XP_004294159.1 | 1e-77 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 3e-54 | LOB domain-containing protein 4 |