PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001441.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 290aa    MW: 32675.9 Da    PI: 5.0543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001441.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08112157555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h ++Er+RR+ +   f  L +++P +     +K++K ++L  +++Y+k+ q
  Itr_sc001441.1_g00004.1 112 HIMAERKRRELLSGQFLALSTIVPGL-----RKMDKTSVLGDTIKYLKQIQ 157
                              899**********************9.....8*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.722107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-14110172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-13112169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6112157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.70E-8112161No hitNo description
SMARTSM003535.1E-11113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDDLSFLDQF QILQSIEQEL ADVLCSSSPE EGSPPPTEAT TSHLGEDDRP LKQLKIHHHP  60
NVDVNVNQPE QSQELIASNA SAEQETEPPE TTTKKAKKSG RRGRPPTHTY DHIMAERKRR  120
ELLSGQFLAL STIVPGLRKM DKTSVLGDTI KYLKQIQERV KTLEEESSKR TMESVVFVKK  180
SQVSFDDDEE MSSGENGNSD EQPLPEIETR LCDDHILLRI YCERQKGIIG KIFSEVEKLN  240
LTVVNSSVAR FGSLALDITI IVEMEKEFDL PMKHIAKILR SAIQHATQTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195610.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLA0A2G9I4F15e-80A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-49bHLH family protein