PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001398.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 508aa    MW: 57356.2 Da    PI: 7.9046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001398.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.61.6e-911255061374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl  A+av+++    a + L++l  +as +gd++qR+aayf+ +L arl+   s  y+ +   +t+     e+l+a++ ++ 
  Itr_sc001398.1_g00006.1 125 LIHLLLVSATAVDENTPGPAAESLSELYRRASLSGDAVQRVAAYFADGLVARLLTRKSPFYDMIMKPPTP----HEHLFAFTHLYR 206
                              689****************************************************999999998777775....799********* PP

                     GRAS  87 vsPilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesgskeeleetgerL 165
                              +sP+++f+h+taNqaI ea+++e       +H+iDfd+s+G+QWp+L+q+L++  ++p   sl+iTg+g+    s  +l+et+ rL
  Itr_sc001398.1_g00006.1 207 ASPFHQFAHFTANQAIIEAFHQEsqtnnASLHVIDFDVSHGFQWPSLIQSLSQSLSPPSkiSLKITGFGP----SLSQLRETEARL 288
                              *********************9977776778*********************9887776679********....9*********** PP

                     GRAS 166 akfAeel.gvpfefnvlvakrledl....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246
                               +fA+ + +++f f+ l+ +++e      + ++ ++k++E++aVnl++ l rl+        + +++L++v  lsP vv++veqe 
  Itr_sc001398.1_g00006.1 289 VSFAKGFrNLSFAFTGLLLDSIEYYtsakTKNQTKTKTHETVAVNLAFYLNRLP--------NFSDTLRTVHLLSPSVVTLVEQEG 366
                              *****9758********888777763332556668888***************9........3557******************** PP

                     GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplse 331
                               ++  +Fl rf+e+l+y++a+fdsl+  lp +s er ++E+ +lg+ei+ + +++g+e  + r e+ e+W++r+e+ GF  v+ls 
  Itr_sc001398.1_g00006.1 367 CRSPRNFLSRFMESLHYFAAMFDSLDDCLPIDSPERLSIEKNYLGNEIKRAMTNNGSEeLVPRYEKTETWKARMESHGFCGVRLSC 452
                              ********************************************************995689************************ PP

                     GRAS 332 kaakqaklllr........kvk.sdgyrveee.sgslv.lgWkdrpLvsvSaWr 374
                              k+++qaklll+        +v+ + g+rv e+ +g ++ l W+d+pL+++S+Wr
  Itr_sc001398.1_g00006.1 453 KNVMQAKLLLKiassghccRVSfDGGFRVFERdDGKAIsLAWQDKPLTTASVWR 506
                              **********93222222233322346664434777778**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098550.21999475IPR005202Transcription factor GRAS
PfamPF035145.4E-89125506IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MVFQSFSSKG QPESPHNFTP NLSPPPPLST HMIWNMEGVV DEELLSLRLG IATGSNEKKI  60
MRRKRKRRDH DDFINNNRLV LSDDEGYEGQ IFSLLQTREQ MLKVEKRVKA VTEEEENDKG  120
GGLHLIHLLL VSATAVDENT PGPAAESLSE LYRRASLSGD AVQRVAAYFA DGLVARLLTR  180
KSPFYDMIMK PPTPHEHLFA FTHLYRASPF HQFAHFTANQ AIIEAFHQES QTNNASLHVI  240
DFDVSHGFQW PSLIQSLSQS LSPPSKISLK ITGFGPSLSQ LRETEARLVS FAKGFRNLSF  300
AFTGLLLDSI EYYTSAKTKN QTKTKTHETV AVNLAFYLNR LPNFSDTLRT VHLLSPSVVT  360
LVEQEGCRSP RNFLSRFMES LHYFAAMFDS LDDCLPIDSP ERLSIEKNYL GNEIKRAMTN  420
NGSEELVPRY EKTETWKARM ESHGFCGVRL SCKNVMQAKL LLKIASSGHC CRVSFDGGFR  480
VFERDDGKAI SLAWQDKPLT TASVWRCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-4613350527378Protein SCARECROW
5b3h_A3e-4613350526377Protein SCARECROW
5b3h_D3e-4613350526377Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166RRKRKR
26167RRKRKRR
36168RRKRKRRD
46267RKRKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154802.10.0PREDICTED: scarecrow-like protein 23
TrEMBLM5VGL50.0M5VGL5_PRUPE; Uncharacterized protein
STRINGEMJ002090.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.13e-46SCARECROW-like 21