PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Itr_sc001395.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 26141.1 Da PI: 8.1474 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.6 | 2.2e-20 | 119 | 153 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Itr_sc001395.1_g00008.1 119 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 153 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.14E-14 | 112 | 154 | No hit | No description |
SMART | SM00401 | 2.7E-20 | 113 | 165 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.4E-17 | 117 | 153 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE profile | PS50114 | 13.784 | 117 | 149 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 6.01E-14 | 118 | 150 | No hit | No description |
Pfam | PF00320 | 5.3E-18 | 119 | 153 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 119 | 144 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MMQHRCSSSC GHCSCCGGAA SSAAAFSMFL SMPNSNHHSQ CYKTCAIHSE DENMYSFAAS 60 SVDCTLSLAT PSTRRFNENE KRGERSLSNF CWDILQPSKQ PPPSSVHKSA VDTIVPRRCA 120 NCDTTSTPLW RNGPRGPKSL CNACGIRFKK EERRASAAAA ATATAGGVGI EAQHMINTSW 180 VHHHHHHNQA QKMGYYSSAA YGFIDDDHRD SDAGAAIPFL SWRLSNVADR SSLVHDFTR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019173038.1 | 1e-135 | PREDICTED: GATA transcription factor 19-like | ||||
TrEMBL | A0A1S4CIH2 | 3e-75 | A0A1S4CIH2_TOBAC; GATA transcription factor 19-like | ||||
STRING | XP_009603282.1 | 2e-75 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3818 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 4e-43 | GATA transcription factor 19 |